10580

GPU Based Massive Parallel Kawasaki Kinetics In Monte Carlo Modelling of Lipid Microdomains

Mateusz Lis, Lukasz Pintal
Instytut Informatyki, Politechnika Wroclawska
arXiv:1309.4349 [cs.DC], (17 Sep 2013)

@article{2013arXiv1309.4349L,

   author={Lis}, M. and {Pintal}, L.},

   title={"{Report: GPU Based Massive Parallel Kawasaki Kinetics In Monte Carlo Modelling of Lipid Microdomains}"},

   journal={ArXiv e-prints},

   archivePrefix={"arXiv"},

   eprint={1309.4349},

   primaryClass={"cs.DC"},

   keywords={Computer Science – Distributed, Parallel, and Cluster Computing},

   year={2013},

   month={sep},

   adsurl={http://adsabs.harvard.edu/abs/2013arXiv1309.4349L},

   adsnote={Provided by the SAO/NASA Astrophysics Data System}

}

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This paper introduces novel method of simulation of lipid biomembranes based on Metropolis Hastings algorithm and Graphic Processing Unit computational power. Method gives up to 55 times computational boost in comparison to classical computations. Extensive study of algorithm correctness is provided. Analysis of simulation results and results obtained with classical simulation methodologies are presented.
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