16444

Hybrid CPU-GPU Framework for Network Motifs

Ryan A. Rossi, Rong Zhou
Palo Alto Research Center (PARC), 3333 Coyote Hill Rd, Palo Alto, CA 94304 USA
arXiv:1608.05138 [cs.DC], (18 Aug 2016)

@article{rossi2016hybrid,

   title={Hybrid CPU-GPU Framework for Network Motifs},

   author={Rossi, Ryan A. and Zhou, Rong},

   year={2016},

   month={aug},

   archivePrefix={"arXiv"},

   primaryClass={cs.DC}

}

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Massively parallel architectures such as the GPU are becoming increasingly important due to the recent proliferation of data. In this paper, we propose a key class of hybrid parallel graphlet algorithms that leverages multiple CPUs and GPUs simultaneously for computing k-vertex induced subgraph statistics (called graphlets). In addition to the hybrid multi-core CPU-GPU framework, we also investigate single GPU methods (using multiple cores) and multi-GPU methods that leverage all available GPUs simultaneously for computing induced subgraph statistics. Both methods leverage GPU devices only, whereas the hybrid multi-core CPU-GPU framework leverages all available multi-core CPUs and multiple GPUs for computing graphlets in large networks. Compared to recent approaches, our methods are orders of magnitude faster, while also more cost effective enjoying superior performance per capita and per watt. In particular, the methods are up to 300 times faster than the recent state-of-the-art method. To the best of our knowledge, this is the first work to leverage multiple CPUs and GPUs simultaneously for computing induced subgraph statistics.
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