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On the Simulations of Evolution-Communication P Systems with Energy without Antiport Rules for GPUs

Richelle Ann B. Juayong, Francis George C. Cabarle, Henry N. Adorna, Miguel A. Martinez-del-Amor
Algorithms & Complexity Lab, Department of Computer Science, University of the Philippines Diliman, Diliman 1101 Quezon City, Philippines
10th Brainstorming Week on Membrane Computing (BWMC12) in conjunction with International Conference on Developments in Membrane Computing (ICDMC2012), 2012

@article{juayong2012simulations,

   title={On the Simulations of Evolution-Communication P Systems with Energy without Antiport Rules for GPUs},

   journal={Tenth Brainstorming Week on Membrane Computing},

   volume={I},

   year={2012},

   month={02/2012},

   pages={267-290},

   publisher={F{‘e}nix Editora},

   address={Seville, Spain},

   keywords={GPU Computing, Membrane computing, parallel computing},

   url={http://www.gcn.us.es/10BWMC/10BWMCvolI/papers/ecpe-bwmc10.pdf},

   author={Richelle A.B. Juayong and Francis G.C. Cabarle and Henry N. Adorna and Miguel A. Mart{‘i}nez-del-Amor},

   editor={M.A. Mart{‘i}nez-del-Amor and Paun, Gh. and I. P{‘e}rez-Hurtado and F.J. Romero-Campero}

}

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In this report, we present our initial proposal on simulating computations on a restricted variant of Evolution-Communication P system with energy (ECPe system) which will then be implemented in Graphics Processing Units (GPUs). This ECPe systems variant prohibits the use of antiport rules for communication. Several possible levels of parallelizations for simulating ECPe systems computations on GPUs are emphasized. Our work is based on a localized matrix representation for the mentioned variant given in a previous literature. Our proposal employs a methodology for forward computing also discussed in the said literature.
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