high performance computing on graphics processing units: hgpu.org

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Iterative Hard Thresholding for Model Selection in Genome-Wide Association Studies

Kevin L. Keys, Gary K. Chen, Kenneth Lange

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Tags: Bioinformatics, Genetics, Machine learning, nVidia, OpenCL, Package, Statistics, Tesla C2050

August 8, 2016 by hgpu

OpenCL-accelerated object classification in video streams using Spatial Pooler of Hierarchical Temporal Memory

Maciej Wielgosz, Marcin Pietron

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Tags: Algorithms, AMD Radeon R9 390, ATI, Computer science, Computer vision, Machine learning, OpenCL, Package, PyOpenCL, Python

August 8, 2016 by hgpu

RETURNN: The RWTH Extensible Training framework for Universal Recurrent Neural Networks

Patrick Doetsch, Albert Zeyer, Paul Voigtlaender, Ilya Kulikov, Ralf Schluter, Hermann Ney

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Tags: Computer science, CUDA, Machine learning, Neural and Evolutionary Computing, nVidia, nVidia GeForce GTX 980, Package, RNN, Speech recognition

August 4, 2016 by hgpu

Drug Drug Interaction Extraction from Biomedical Literature Using Syntax Convolutional Neural Network

Zhehuan Zhao, Zhihao Yang, Ling Luo, Hongfei Lin, Jian Wang

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Tags: Bioinformatics, Biology, CUDA, Deep learning, Neural networks, NLP, nVidia, Package, Python, Tesla K20, Text mining

August 1, 2016 by hgpu

3D visualization of astronomy data cubes using immersive displays

Gilles Ferrand, Jayanne English, Pourang Irani

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Tags: Astrophysics, Instrumentation and Methods for Astrophysics, nVidia, OpenGL, Package, Rendering, Virtual reality, Visualization

August 1, 2016 by hgpu

An Autotuning Framework for Intel Xeon Phi Platforms

Lefteris Christoforidis

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Tags: Computer science, Intel Xeon Phi, Package, Performance, Python, Thesis

July 30, 2016 by hgpu

Real-Time Stochastic Kinodynamic Motion Planning via Multiobjective Search on GPUs

Brian Ichter, Edward Schmerling, Ali-akbar Agha-mohammadi, Marco Pavone

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Tags: Algorithms, Computer science, CUDA, nVidia, nVidia GeForce GTX 980, Package, Robotics

July 28, 2016 by hgpu

Gerbil: A Fast and Memory-Efficient k-mer Counter with GPU-Support

Marius Erbert, Steffen Rechner, Matthias Muller-Hannemann

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Tags: Bioinformatics, Biology, Computer science, CUDA, nVidia, nVidia GeForce GTX 970, nVidia GeForce GTX Titan, Package

July 26, 2016 by hgpu

Scientific Computing Using Consumer Video-Gaming Hardware Devices

Glenn Volkema, Gaurav Khanna

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Tags: AMD Radeon R9 Fury X, ATI, Benchmarking, Computer science, nVidia, nVidia Tegra TX1, OpenCL, Package, Performance, Tesla K40

July 20, 2016 by hgpu

IODA: an Input/Output Deep Architecture for image labeling

J. Lerouge, R. Herault, Clement Chatelain, F. Jardin, R. Modzelewski

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Tags: Computer science, CUDA, Deep learning, Neural networks, nVidia, Package, Python, Tesla C1060, Theano

July 18, 2016 by hgpu

GeauxDock: Accelerating Structure-Based Virtual Screening with Heterogeneous Computing

Ye Fang, Yun Ding, Wei P. Feinstein, David M. Koppelman, Juana Moreno, Mark Jarrell, J. Ramanujam, Michal Brylinski

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Tags: Algorithms, Chemistry, CUDA, Heterogeneous systems, Intel Xeon Phi, Medicine, Molecular dynamics, nVidia, nVidia GeForce GTX 980, OpenMP, Package

July 16, 2016 by hgpu

GPU Accelerated Discrete Element Method (DEM) Molecular Dynamics for Conservative, Faceted Particle Simulations

Matthew Spellings, Ryan L. Marson, Joshua A. Anderson, Sharon C. Glotzer

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Tags: Computational Physics, CUDA, Molecular dynamics, nVidia, nVidia Quadro M 6000, Package, Particle simulation, Physics

July 13, 2016 by hgpu

gpu_tracker: Context manager and CLI that tracks the computational-resource-usage of a code block or shell command, particularly the GPU usage

gpu_tracker: Python package for tracking and profiling GPU utilization in both desktop and high-performance computing environments

LOOPer: a polyhedral compiler for expressing fast and portable data parallel algorithms

LOOPer: A Learned Automatic Code Optimizer For Polyhedral Compilers

OpenMC Monte Carlo Code

Performance Portable Monte Carlo Particle Transport on Intel, NVIDIA, and AMD GPUs

Polygeist: C/C++ frontend for MLIR

Retargeting and Respecializing GPU Workloads for Performance Portability

Parallel Gaussian process with kernel approximation in CUDA

Optical flow algorithms for SYCL

SYCL in the edge: performance and energy evaluation for heterogeneous acceleration

OpenMP5-Offload-OpenMC-Intel-PVC

Distributed OpenMP Offloading of OpenMC on Intel GPU MAX Accelerators

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high performance computing on graphics processing units: hgpu.org

Iterative Hard Thresholding for Model Selection in Genome-Wide Association Studies

OpenCL-accelerated object classification in video streams using Spatial Pooler of Hierarchical Temporal Memory

RETURNN: The RWTH Extensible Training framework for Universal Recurrent Neural Networks

Drug Drug Interaction Extraction from Biomedical Literature Using Syntax Convolutional Neural Network

3D visualization of astronomy data cubes using immersive displays

An Autotuning Framework for Intel Xeon Phi Platforms

Real-Time Stochastic Kinodynamic Motion Planning via Multiobjective Search on GPUs

Gerbil: A Fast and Memory-Efficient k-mer Counter with GPU-Support

Scientific Computing Using Consumer Video-Gaming Hardware Devices

IODA: an Input/Output Deep Architecture for image labeling

GeauxDock: Accelerating Structure-Based Virtual Screening with Heterogeneous Computing

GPU Accelerated Discrete Element Method (DEM) Molecular Dynamics for Conservative, Faceted Particle Simulations

Recent source codes

QArray

Celerity: High-level C++ for Accelerator Clusters

CIFAR-10 Airbench: 94% on CIFAR-10 in 3.29 second

gpu_tracker: Context manager and CLI that tracks the computational-resource-usage of a code block or shell command, particularly the GPU usage

LOOPer: a polyhedral compiler for expressing fast and portable data parallel algorithms

OpenMC Monte Carlo Code

Polygeist: C/C++ frontend for MLIR

Parallel Gaussian process with kernel approximation in CUDA

Optical flow algorithms for SYCL

OpenMP5-Offload-OpenMC-Intel-PVC

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