We present a simple parallel algorithm to test chordality of graphs which is based on the parallel Lexicographical Breadth-First Search algorithm. In total, the algorithm takes time O(N) on N-threads machine and it performs work O(N^2), where N is the number of vertices in a graph. Our implementation of the algorithm uses a GPU environment […]

August 28, 2015 by hgpu

More and more computers use hybrid architectures combining multi-core processors (CPUs) and hardware accelerators like GPUs (Graphics Processing Units). These hybrid parallel platforms require new scheduling strategies. This work is devoted to a characterization of this new type of scheduling problems. The most studied objective in this work is the minimization of the makespan, which […]

August 24, 2015 by hgpu

The minimal sets within a collection of sets are defined as the ones which do not have a proper subset within the collection, and the maximal sets are the ones which do not have a proper superset within the collection. Identifying extremal sets is a fundamental problem with a wide-range of applications in SAT solvers, […]

August 10, 2015 by hgpu

With the emergence of general purpose GPU (GPGPU) programming, concurrent data processing of large arrays of data has gained a significant boost in performance. However, due to the memory architecture between the host and GPU device and other limitations in the instructions available on GPUs, the implementation of dynamic data structures, like linked list and […]

July 15, 2015 by hgpu

Memory optimizations have became increasingly important in order to fully exploit the computational power of modern GPUs. The data arrangement has a big impact on the performance, and it is very hard for GPU programmers to identify a well-suited data layout. Classical data layout transformations include grouping together data fields that have similar access patterns, […]

June 17, 2015 by hgpu

We develop an efficient parallel algorithm for answering shortest-path queries in planar graphs and implement it on a multi-node CPU/GPU clusters. The algorithm uses a divide-and-conquer approach for decomposing the input graph into small and roughly equal subgraphs and constructs a distributed data structure containing shortest distances within each of those subgraphs and between their […]

March 28, 2015 by hgpu

The ability to timely process significant amounts of continuously updated spatial data is mandatory for an increasing number of applications. In this paper we focus on a specific data-intensive problem concerning the repeated processing of huge amounts of k nearest neighbours (k-NN) queries over massive sets of moving objects, where the spatial extents of queries […]

December 22, 2014 by hgpu

This thesis studies the scalability of the similarity search problem in large-scale multidimensional data. Similarity search, translating into the neighbour search problem, finds many applications for information retrieval, visualization, machine learning and data mining. The current exponential growth of data motivates the need for approximate and scalable algorithms. In most of existing algorithms and data-structures, […]

October 13, 2014 by hgpu

The problem of computing the Betweenness Centrality (BC) is important in analyzing graphs in many practical applications like social networks, biological networks, transportation networks, electrical circuits, etc. Since this problem is computation intensive, researchers have been developing algorithms using high performance computing resources like supercomputers, clusters, and Graphics Processing Units (GPUs). Current GPU algorithms for […]

September 30, 2014 by hgpu

Graphics Processing Units (GPUs) have been used to enhance the speed and efficiency of both data structures and algorithms alike. A common data structure used in Computer Science is the Bloom Filter, which is used in many types of applications including databases and security logging. The Bloom Filter is a lossy data structure that uses […]

August 13, 2014 by hgpu

We present PEANUT (ParallEl AligNment UTility), a highly parallel GPU-based read mapper with several distinguishing features, including a novel q-gram index (called the q-group index) with small memory footprint built on-the-fly over the reads and the possibility to output both the best hits or all hits of a read. Designing the algorithm particularly for the […]

March 10, 2014 by hgpu

The availability and utility of large numbers of Graphical Processing Units (GPUs) have enabled parallel computations using extensive multi-threading. Sequential access to global memory and contention at the size-limited shared memory have been main impediments to fully exploiting potential performance in architectures having a massive number of GPUs. After performing extensive study of data structures […]

July 16, 2013 by hgpu