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Salah Zaher, Amr Badr, Ibrahim Farag, Tarek AbdElmaged
Simulators are limited by the available resources on the GPU as well as the CPU. Simulation of P systems with active membrane using GPUs is a new concept in the development of applications for membrane computing. P systems are an alternative approach to extract all performance available on GPUs due to its parallel nature. In […]
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Francis George C. Cabarle, Henry N. Adorna, Miguel A. Martinez-Del-Amor, Mario J. Perez-Jimenez
In this work we present further extensions and improvements of a Spiking Neural P system (for short, SNP systems) simulator on graphics processing units (for short, GPUs). Using previous results on representing SNP system computations using linear algebra, we analyze and implement a computation simulation algorithm on the GPU. A two-level parallelism is introduced for […]
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Richelle Ann B. Juayong, Francis George C. Cabarle, Henry N. Adorna, Miguel A. Martinez-del-Amor
In this report, we present our initial proposal on simulating computations on a restricted variant of Evolution-Communication P system with energy (ECPe system) which will then be implemented in Graphics Processing Units (GPUs). This ECPe systems variant prohibits the use of antiport rules for communication. Several possible levels of parallelizations for simulating ECPe systems computations […]
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Jose M. Cecilia, Andy Nisbet, Martyn Amos, Jose M. Garcia, Manuel Ujaldon
We present GPU implementations of two different nature-inspired optimization methods for well-known optimization problems. Ant Colony Optimization (ACO) is a two-stage population-based method modelled on the foraging behaviour of ants, while P systems provide a high-level computational modelling framework that combines the structure and dynamic aspects of biological systems (in particular, their parallel and non-deterministic […]
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Jose Cecilia, Jose Garcia, Gines Guerrero, Miguel Martinez-del-Amor, Mario Perez-Jimenez, Manuel Ujaldon
Membrane Computing is a discipline aiming to abstract formal computing models, called membrane systems or P systems, from the structure and functioning of the living cells as well as from the cooperation of cells in tissues, organs, and other higher order structures. This framework provides polynomial time solutions to NP-complete problems by trading space for […]
Jose M. Cecilia, Gines D. Guerrero, Jose M. Garcia, Miguel A. Martinez-del-Amor, Ignacio Perez-Hurtado, Mario J. Perez-Jimenez
Since CUDA programing model appeared on the general purpose computations, the developers can extract all the power contained in GPUs (Graphics Processing Unit) across many computational domains. Among these domains, P systems or membrane systems provide a high level computational modeling framework that allows, in theory, to obtain polynomial time solutions to NP-complete problems by […]
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J.M. Cecilia, J.M. Garcia, G.D. Guerrero, M.A. Martinez-Amor, M.J. Perez-Jimenez, M. Ujaldon
GPUs constitute nowadays a solid alternative for high performance computing, and the advent of CUDA/OpenCL allow programmers a friendly model to accelerate a broad range of applications. The way GPUs exploit parallelism differ from multi-core CPUs, which raises new challenges to take advantage of its tremendous computing power. In this respect, P systems or Membrane […]
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Jose M. Cecilia, Jose M. Garcia, Gines D. Guerrero, Miguel A. Martinez-del-Amor, Ignacio Perez-Hurtado, Mario J. Perez-Jimenez
P systems are inherently parallel and non-deterministic theoretical computing devices defined inside the field of Membrane Computing. Many P system simulators have been presented in this area, but they are inefficient since they can not handle the parallelism of these devices. Nowadays, we are witnessing the consolidation of the GPUs as a parallel framework to […]

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