As parallel and heterogeneous computing becomes more and more a necessity for implementing high performance simulators, it becomes increasingly harder for scientists and engineers without experience in high performance computing to achieve good performance. Even for those who knows how to write efficient code the process for doing so is time consuming and error prone, […]

September 8, 2014 by hgpu

A model of a multilayer device with non-trivial geometrical and material structure and its working process is suggested. The thermal behavior of the device as one principle characteristic is simulated. The algorithm for solving the non-stationary heat conduction problem with a time-dependent periodical heating source is suggested. The algorithm is based on finite difference explicit–implicit […]

August 27, 2014 by hgpu

Multiresolution Analysis (MRA) is a mathematical method that is based on working on a problem at different scales. One of its applications is medical imaging where processing at multiple scales, based on the concept of Gaussian and Laplacian image pyramids, is a well-known technique. It is often applied to reduce noise while preserving image detail […]

August 23, 2014 by hgpu

The last decade saw the long tradition of frequency scaling of processing units grind to a halt, and efforts were re-focused on maintaining computational growth by other means; such as increased parallelism, deep memory hierarchies and complex execution logic. After a long period of "boring productivity", a host of new architectures, accelerators, programming languages and […]

July 24, 2014 by hgpu

The numerical solution of partial differential equations using the finite element method is one of the key applications of high performance computing. Local assembly is its characteristic operation. This entails the execution of a problem-specific kernel to numerically evaluate an integral for each element in the discretized problem domain. Since the domain size can be […]

July 10, 2014 by hgpu

Many problems in computational science and engineering involve partial differential equations and thus require the numerical solution of large, sparse (non)linear systems of equations. Multigrid is known to be one of the most efficient methods for this purpose. However, the concrete multigrid algorithm and its implementation highly depend on the underlying problem and hardware. Therefore, […]

June 23, 2014 by hgpu

This tutorial is written for beginners as an introduction to basic wave propagation using nite dierence method, from acoustic and elastic wave modeling, to reverse time migration and full waveform inversion. Most of the theoretical delineations summarized in this tutorial have been implemented in Madagascar with Matlab, C and CUDA programming, which will benet readers’ […]

June 8, 2014 by hgpu

A major challenge in PDE software is the balance between user-level flexibility and performance on heterogeneous hardware. We discuss our ideas on how this challenge can be tackled, exemplarily for the DUNE framework and in particular its linear algebra and solver components. We demonstrate how the former MPI-only implementation is modified to support MPI+[CPU/GPU] threading […]

April 25, 2014 by hgpu

This paper deals with a Galerkin-based multi-scale time integration of a viscoelastic rope model. Using Hamilton’s dynamical formulation, Newton’s equation of motion as a second-order partial differential equation is transformed into two coupled first order partial differential equations in time. The considered finite viscoelastic deformations are described by means of a deformation-like internal variable determined […]

April 24, 2014 by hgpu

Scientific computation is the field of study that uses computers to implement mathematical models of physical phenomena such as FEM in deformation measurement in virtual reality. Scientific and engineering problems that would be almost impossible to solve by hand whereas on a computer, it can be handled properly. A numerical algorithm calculating for different fields […]

April 9, 2014 by hgpu

## Jacobian-free Newton-Krylov methods with GPU acceleration for computing nonlinear ship wave patterns

The nonlinear problem of steady free-surface flow past a submerged source is considered as a case study for three-dimensional ship wave problems. Of particular interest is the distinctive wedge-shaped wave pattern that forms on the surface of the fluid. By reformulating the governing equations with a standard boundary-integral method, we derive a system of nonlinear […]

March 27, 2014 by hgpu

We have developed a numerical model that simulates the growth of small avascular solid tumors. At its core lies a set of partial differential equations that describe diffusion processes as well as transport and reaction mechanisms of a selected number of nutrients. Although the model relies on a restricted subset of molecular pathways, it compares […]

March 19, 2014 by hgpu