high performance computing on graphics processing units: hgpu.org

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Kokkos: Enabling performance portability across manycore architectures

H. Carter Edwards, Christian R. Trott

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Tags: Code generation, Computer science, CUDA, Intel Phi, Molecular dynamics, nVidia, Package, Tesla K20

September 17, 2013 by hgpu

Parallel Computing Methods For Particle Accelerator Design

Diana Andreea Popescu

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Tags: Algorithms, CUDA, High Energy Physics - Experiment, nVidia, nVidia Quadro K 2000, OpenMP, Package, Physics, Tesla K20, Thesis

September 17, 2013 by hgpu

A biomolecular electrostatics solver using Python, GPUs and boundary elements that can handle solvent-filled cavities and Stern layers

Christopher D. Cooper, Jaydeep P. Bardhan, L. A. Barba

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Tags: Biomolecules, Boltzmann equation, Computational Physics, CUDA, Electrostatics, Intel Phi, nVidia, Package, Physics, Poisson Boltzmann, Python, Tesla C2075

September 17, 2013 by hgpu

Expressed Sequence Tag Clustering using Commercial Gaming Hardware

Charl van Deventer, Willem A. Clarke, Scott Hazelhurst

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Tags: Algorithms, Bioinformatics, Clustering, Computer science, CUDA, nVidia, nVidia GeForce GTX 260, nVidia GeForce GTX 480, Package, Thesis

September 15, 2013 by hgpu

A Novel CPU/GPU Simulation Environment for Large-Scale Biologically-Realistic Neural Modeling

Roger V. Hoang, Devyani Tanna, Laurence C. Jayet Bray, Sergiu M. Dascalu, Frederick C. Harris Jr.

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Tags: Biology, CUDA, Neural networks, Neuroscience, nVidia, nVidia GeForce GTX 460, nVidia GeForce GTX 480, nVidia GeForce GTX 680, Package, Tesla C2050

September 14, 2013 by hgpu

FuzzyGPU: a fuzzy arithmetic library for GPU

David Defour, Manuel Marin

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Tags: Computer science, CUDA, nVidia, nVidia GeForce GTX 480, nVidia GeForce GTX 680, Package

September 13, 2013 by hgpu

Recent progress and challenges in exploiting graphics processors in computational fluid dynamics

Kyle E Niemeyer, Chih-Jen Sung

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Tags: Algorithms, Computational Physics, CUDA, Fluid dynamics, Lattice Boltzmann model, Navier-Stokes equations, NSEs, nVidia, OpenACC, Package, Review, Tesla C2075

September 13, 2013 by hgpu

The discrete dipole approximation code DDscat.C++: features, limitations and plans

V. Ya. Choliy

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Tags: Astrophysics, CUDA, Fortran, nVidia, nVidia GeForce GTX 260, Package

September 4, 2013 by hgpu

Detecting multiple periodicities in observational data with the multi-frequency periodogram. II. Frequency Decomposer, a parallelized time-series analysis algorithm

Roman V. Baluev

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Tags: Algorithms, Astrophysics, CUDA, Instrumentation and Methods for Astrophysics, nVidia, nVidia GeForce GT 210, Package

September 4, 2013 by hgpu

Oncilla: A GAS Runtime for Efficient Resource Allocation and Data Movement in Accelerated Clusters

Jeff Young, Se Hoon Shon, Sudhakar Yalamanchili, Alex Merritt, Karsten Schwan

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Tags: Computer science, CUDA, GPU cluster, Heterogeneous systems, nVidia, Package

September 2, 2013 by hgpu

Computing High Resolution Explicit Corridor Maps using Parallel Technologies

R. Bonfiglioli

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Tags: Computer science, CUDA, nVidia, nVidia GeForce GTX 680, OpenCL, Package, Path problems, Thesis

August 31, 2013 by hgpu

Accelerating Text Mining Workloads in a MapReduce-based Distributed GPU Environment

Peter Wittek, Sandor Daranyi

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Tags: Algorithms, Computer science, CUDA, MapReduce, nVidia, Package, Self-organizing map, Tesla M2050, Text mining

August 31, 2013 by hgpu

gpu_tracker: Context manager and CLI that tracks the computational-resource-usage of a code block or shell command, particularly the GPU usage

gpu_tracker: Python package for tracking and profiling GPU utilization in both desktop and high-performance computing environments

LOOPer: a polyhedral compiler for expressing fast and portable data parallel algorithms

LOOPer: A Learned Automatic Code Optimizer For Polyhedral Compilers

OpenMC Monte Carlo Code

Performance Portable Monte Carlo Particle Transport on Intel, NVIDIA, and AMD GPUs

Polygeist: C/C++ frontend for MLIR

Retargeting and Respecializing GPU Workloads for Performance Portability

Parallel Gaussian process with kernel approximation in CUDA

Optical flow algorithms for SYCL

SYCL in the edge: performance and energy evaluation for heterogeneous acceleration

OpenMP5-Offload-OpenMC-Intel-PVC

Distributed OpenMP Offloading of OpenMC on Intel GPU MAX Accelerators

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high performance computing on graphics processing units: hgpu.org

Packages

Kokkos: Enabling performance portability across manycore architectures

Parallel Computing Methods For Particle Accelerator Design

A biomolecular electrostatics solver using Python, GPUs and boundary elements that can handle solvent-filled cavities and Stern layers

Expressed Sequence Tag Clustering using Commercial Gaming Hardware

A Novel CPU/GPU Simulation Environment for Large-Scale Biologically-Realistic Neural Modeling

FuzzyGPU: a fuzzy arithmetic library for GPU

Recent progress and challenges in exploiting graphics processors in computational fluid dynamics

The discrete dipole approximation code DDscat.C++: features, limitations and plans

Detecting multiple periodicities in observational data with the multi-frequency periodogram. II. Frequency Decomposer, a parallelized time-series analysis algorithm

Oncilla: A GAS Runtime for Efficient Resource Allocation and Data Movement in Accelerated Clusters

Computing High Resolution Explicit Corridor Maps using Parallel Technologies

Accelerating Text Mining Workloads in a MapReduce-based Distributed GPU Environment

Recent source codes

QArray

Celerity: High-level C++ for Accelerator Clusters

CIFAR-10 Airbench: 94% on CIFAR-10 in 3.29 second

gpu_tracker: Context manager and CLI that tracks the computational-resource-usage of a code block or shell command, particularly the GPU usage

LOOPer: a polyhedral compiler for expressing fast and portable data parallel algorithms

OpenMC Monte Carlo Code

Polygeist: C/C++ frontend for MLIR

Parallel Gaussian process with kernel approximation in CUDA

Optical flow algorithms for SYCL

OpenMP5-Offload-OpenMC-Intel-PVC

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