high performance computing on graphics processing units: hgpu.org

Applications

hgpu.org » Applications

GPU Multiple Sequence Alignment Fourier-Space Cross-Correlation Alignment

Matthias Alexander Lee

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Tags: Bioinformatics, Biology, Computational Complexity, CUDA, nVidia, Package, Python, RNA, Sequence alignment, Signal processing

May 31, 2013 by hgpu

Effects of Concurrency Techniques and Algorithm Performance: A Comparative Analysis of Single-Threaded, Multi-Threaded, and GPGPU Programming Techniques

Joshua Penton

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Tags: ATI, ATI Radeon HD 6750 M, Computer science, FFT, Java, OpenCL, Package, Performance, Programming techniques

May 28, 2013 by hgpu

Trapping of giant-planet cores – I. vortex aided trapping at the outer dead zone edge

Zs. Regaly, Zs. Sandor, P. Csomos, S. Ataiee

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Tags: Astrophysics, CUDA, Numerical simulation, nVidia, Package, Solar and Stellar Astrophysics, Tesla C2050

May 27, 2013 by hgpu

An Investigation of the Performance Portability of OpenCL

S.J. Pennycook, S.D. Hammond, S.A. Wright, J.A. Herdman, I. Miller, S.A. Jarvis

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Tags: ATI, ATI FirePro V7800, Benchmarking, Computer science, CUDA, Fortran, MPI, nVidia, OpenCL, Package, Performance, Tesla C1060, Tesla C2050

May 21, 2013 by hgpu

CLgrep: A Parallel String Matching Tool

Peng Wu

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Tags: Algorithms, Computer science, Heterogeneous systems, nVidia, nVidia GeForce GTX 280, OpenCL, Package, String matching, Thesis

May 20, 2013 by hgpu

Point Spread Function Estimation of Solar Surface Images with a Cooperative Particle Swarm Optimization on GPUs

Peter Frank Perroni

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Tags: Algorithms, Astrophysics, Image processing, nVidia, OpenCL, Package, Particle swarm optimization, Tesla C2050, Thesis

May 16, 2013 by hgpu

Gauge fixing in lattice QCD with multi-GPUs

Mario Schrock, Hannes Vogt

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Tags: Algorithms, CUDA, High Energy Physics - Lattice, nVidia, nVidia GeForce GTX 480, nVidia GeForce GTX 580, nVidia Quadro FX 4000, Package, Physics, QCD, Tesla C2070

May 16, 2013 by hgpu

An Implementation of the Discontinuous Galerkin Method on Graphics Processing Units

Martin Fuhry

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Tags: Computer science, CUDA, Differential equations, nVidia, nVidia GeForce GTX 460, nVidia GeForce GTX 580, Package, Partial differential equations, PDEs, Thesis

May 11, 2013 by hgpu

Somoclu: An Efficient Distributed Library for Self-Organizing Maps

Peter Wittek

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Tags: Computer science, CUDA, Mathematical Software, MPI, Neural and Evolutionary Computing, nVidia, Package, Self-organizing map, Tesla M2050, Text mining

May 8, 2013 by hgpu

Simulating the universe with GPU-accelerated supercomputers: n-body methods, tests, and examples

Benjamin D. Wibking

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Tags: Astrophysics, Cosmology, CUDA, Gravitation, N-body simulation, nVidia, Package, Thesis

May 7, 2013 by hgpu

Accelerating Financial Applications on the GPU

Scott Grauer-Gray, William Killian, Robert Searles, John Cavazos

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Tags: Computational finance, CUDA, Finance, nVidia, OpenACC, OpenCL, Package, Review, Tesla C2050, Tesla K20

May 6, 2013 by hgpu

Split tiling for GPUs: automatic parallelization using trapezoidal tiles

Tobias Grosser, Albert Cohen, Paul H J Kelly, J. Ramanujam, P. Sadayappan, Sven Verdoolaege

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Tags: Code generation, Compilers, Computer science, CUDA, nVidia, nVidia GeForce GTX 470, nVidia Quadro NVS 5200 M, Package, Performance

April 29, 2013 by hgpu

SimSYCL: Synchronous, single-threaded, library-only SYCL implementation for debugging and verification

SimSYCL: A SYCL Implementation Targeting Development, Debugging, Simulation and Conformance

gpu_tracker: Context manager and CLI that tracks the computational-resource-usage of a code block or shell command, particularly the GPU usage

gpu_tracker: Python package for tracking and profiling GPU utilization in both desktop and high-performance computing environments

CIFAR-10 Airbench: 94% on CIFAR-10 in 3.29 second

94% on CIFAR-10 in 3.29 Seconds on a Single GPU

LOOPer: a polyhedral compiler for expressing fast and portable data parallel algorithms

LOOPer: A Learned Automatic Code Optimizer For Polyhedral Compilers

OpenMC Monte Carlo Code

Performance Portable Monte Carlo Particle Transport on Intel, NVIDIA, and AMD GPUs

Polygeist: C/C++ frontend for MLIR

Retargeting and Respecializing GPU Workloads for Performance Portability

Parallel Gaussian process with kernel approximation in CUDA

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high performance computing on graphics processing units: hgpu.org

Applications

GPU Multiple Sequence Alignment Fourier-Space Cross-Correlation Alignment

Effects of Concurrency Techniques and Algorithm Performance: A Comparative Analysis of Single-Threaded, Multi-Threaded, and GPGPU Programming Techniques

Trapping of giant-planet cores – I. vortex aided trapping at the outer dead zone edge

An Investigation of the Performance Portability of OpenCL

CLgrep: A Parallel String Matching Tool

Point Spread Function Estimation of Solar Surface Images with a Cooperative Particle Swarm Optimization on GPUs

Gauge fixing in lattice QCD with multi-GPUs

An Implementation of the Discontinuous Galerkin Method on Graphics Processing Units

Somoclu: An Efficient Distributed Library for Self-Organizing Maps

Simulating the universe with GPU-accelerated supercomputers: n-body methods, tests, and examples

Accelerating Financial Applications on the GPU

Split tiling for GPUs: automatic parallelization using trapezoidal tiles

Recent source codes

SimSYCL: Synchronous, single-threaded, library-only SYCL implementation for debugging and verification

GPU plugin for PySCF

QArray

Celerity: High-level C++ for Accelerator Clusters

gpu_tracker: Context manager and CLI that tracks the computational-resource-usage of a code block or shell command, particularly the GPU usage

CIFAR-10 Airbench: 94% on CIFAR-10 in 3.29 second

LOOPer: a polyhedral compiler for expressing fast and portable data parallel algorithms

OpenMC Monte Carlo Code

Polygeist: C/C++ frontend for MLIR

Parallel Gaussian process with kernel approximation in CUDA

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