high performance computing on graphics processing units: hgpu.org

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A compiler toolkit for array-based languages targeting CPU/GPU hybrid systems

Rahul Garg, Laurie Hendren

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Tags: ATI, ATI Radeon HD 5850, ATI Radeon HD 7970, Code generation, Compilers, Computer science, OpenCL, Package, Python, Tesla C2050

November 26, 2012 by hgpu

PyFAI, a versatile library for azimuthal regrouping

Jerome Kieffer, Dimitrios Karkoulis

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Tags: ATI, ATI FirePro V7800, Computer science, nVidia, nVidia GeForce GTX 580, OpenCL, Package, Python, Tesla C2075

November 25, 2012 by hgpu

Efficient reconstruction of biological networks via transitive reduction on general purpose graphics processors

Dragan Bosnacki, Maximilian R Odenbrett, Anton Wijs, Willem Ligtenberg, Peter Hilbers

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Tags: Algorithms, Bioinformatics, Biology, CUDA, nVidia, nVidia GeForce GTX 480, Package

November 23, 2012 by hgpu

A scalable, numerically stable, high-performance tridiagonal solver using GPUs

Li-Wen Chang, John A. Stratton, Hee-Seok Kim, Wen-Mei W. Hwu

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Tags: Algorithms, Computer science, CUDA, Linear Algebra, nVidia, nVidia GeForce GTX 480, Package, Tesla M2070

November 20, 2012 by hgpu

Auto-tunable GPU BLAS (thesis)

Geir Josten Lien

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Tags: ATI, ATI Radeon HD 5870, Benchmarking, Computer science, MPI, nVidia, nVidia GeForce GTX 570, OpenCL, Package, Tesla C2050, Thesis

November 18, 2012 by hgpu

GPU-Based Airway Tree Segmentation and Centerline Extraction

Erik Smistad

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Tags: Algorithms, Medicine, nVidia, OpenCL, Package, Tesla C2070, Thesis, Tomography

November 18, 2012 by hgpu

G-SNPM – A GPU-based SNP mapping tool

Alessandro Orro, Andrea Manconi, Emanuele Manca, Giuliano Armano, Luciano Milanesi

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Tags: Algorithms, Bioinformatics, Biology, CUDA, Next-Generation sequencing, nVidia, nVidia GeForce GTX 480, Package, Python, Smith-Waterman algorithm

November 14, 2012 by hgpu

Real-Time Surface Extraction and Visualization of Medical Images using OpenCL and GPUs

Erik Smistad, Anne C. Elster, Frank Lindseth

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Tags: ATI, ATI Radeon HD 5870, Medicine, nVidia, nVidia GeForce GTX 470, OpenCL, Package, Tesla C2070, Visualization

November 14, 2012 by hgpu

Parallel execution of a parameter sweep for molecular dynamics simulations in a hybrid GPU/CPU environment

Emmanuel N. Millan, Carlos Garcia Garino, Eduardo M. Bringa

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Tags: Chemistry, CUDA, Molecular dynamics, nVidia, OpenMPI, Package, Ruby, Tesla C2050

November 10, 2012 by hgpu

GPU Virtualization

Kristoffer Robin Stokke

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Tags: Code generation, Computer science, CUDA, nVidia, nVidia GeForce GTX 280, nVidia Quadro NVS 295, Package, Python, Thesis, Virtualization

November 7, 2012 by hgpu

cphVB: A System for Automated Runtime Optimization and Parallelization of Vectorized Applications

Mads Ruben Burgdorff Kristensen, Simon Andreas Frimann Lund, Troels Blum, Brian Vinter

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Tags: Computer science, OpenCL, Optimization, Package, Programming Languages, Python

November 5, 2012 by hgpu

DL: A data layout transformation system for heterogeneous computing

I-Jui Sung, Geng Daniel Liu, Wen-Mei W. Hwu

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Tags: Computer science, Heterogeneous systems, nVidia, nVidia GeForce GTX 480, OpenCL, Package

November 1, 2012 by hgpu

SimSYCL: Synchronous, single-threaded, library-only SYCL implementation for debugging and verification

SimSYCL: A SYCL Implementation Targeting Development, Debugging, Simulation and Conformance

gpu_tracker: Context manager and CLI that tracks the computational-resource-usage of a code block or shell command, particularly the GPU usage

gpu_tracker: Python package for tracking and profiling GPU utilization in both desktop and high-performance computing environments

CIFAR-10 Airbench: 94% on CIFAR-10 in 3.29 second

94% on CIFAR-10 in 3.29 Seconds on a Single GPU

LOOPer: a polyhedral compiler for expressing fast and portable data parallel algorithms

LOOPer: A Learned Automatic Code Optimizer For Polyhedral Compilers

OpenMC Monte Carlo Code

Performance Portable Monte Carlo Particle Transport on Intel, NVIDIA, and AMD GPUs

Polygeist: C/C++ frontend for MLIR

Retargeting and Respecializing GPU Workloads for Performance Portability

Parallel Gaussian process with kernel approximation in CUDA

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high performance computing on graphics processing units: hgpu.org

Applications

A compiler toolkit for array-based languages targeting CPU/GPU hybrid systems

PyFAI, a versatile library for azimuthal regrouping

Efficient reconstruction of biological networks via transitive reduction on general purpose graphics processors

A scalable, numerically stable, high-performance tridiagonal solver using GPUs

Auto-tunable GPU BLAS (thesis)

GPU-Based Airway Tree Segmentation and Centerline Extraction

G-SNPM – A GPU-based SNP mapping tool

Real-Time Surface Extraction and Visualization of Medical Images using OpenCL and GPUs

Parallel execution of a parameter sweep for molecular dynamics simulations in a hybrid GPU/CPU environment

GPU Virtualization

cphVB: A System for Automated Runtime Optimization and Parallelization of Vectorized Applications

DL: A data layout transformation system for heterogeneous computing

Recent source codes

SimSYCL: Synchronous, single-threaded, library-only SYCL implementation for debugging and verification

GPU plugin for PySCF

QArray

Celerity: High-level C++ for Accelerator Clusters

gpu_tracker: Context manager and CLI that tracks the computational-resource-usage of a code block or shell command, particularly the GPU usage

CIFAR-10 Airbench: 94% on CIFAR-10 in 3.29 second

LOOPer: a polyhedral compiler for expressing fast and portable data parallel algorithms

OpenMC Monte Carlo Code

Polygeist: C/C++ frontend for MLIR

Parallel Gaussian process with kernel approximation in CUDA

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