high performance computing on graphics processing units: hgpu.org

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GPU-based ultra fast dose calculation using a finite pencil beam model

Xuejun Gu, Dongju Choi, Chunhua Men, Hubert Pan, Amitava Majumdar, Steve B. Jiang

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Tags: CUDA, Medical Physics, Medicine, nVidia, nVidia GeForce 9500 GT, nVidia GeForce GTX 285, Physics, Radiotherapy, Tesla C1060, Tesla S1070

November 13, 2010 by hgpu

Implementation and evaluation of various demons deformable image registration algorithms on GPU

Xuejun Gu, Hubert Pan, Yun Liang, Richard Castillo, Deshan Yang, Dongju Choi, Edward Castillo, Amitava Majumdar, Thomas Guerrero, Steve B. Jiang

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Tags: CUDA, Image registration, Medical Physics, Medicine, nVidia, nVidia GeForce GTX 285, Physics, Radiotherapy

November 13, 2010 by hgpu

Development of a GPU-based Monte Carlo dose calculation code for coupled electron-photon transport

Xun Jia, Xuejun Gu, Josep Sempau, Dongju Choi, Amitava Majumdar, Steve B. Jiang

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Tags: CUDA, Medical Physics, Medicine, Monte Carlo simulation, nVidia, Physics, Radiotherapy, Tesla C1060

November 13, 2010 by hgpu

TWQCD’s dynamical DWF project

Ting-Wai Chiu, Tian-Shin Guu, Tung-Han Hsieh, Chao-Hsi Huang, Yu-Ying Lee, Yao-Yuan Mao, Kenji Ogawa, Po-Kai Tseng

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Tags: CUDA, High Energy Physics - Lattice, Monte Carlo simulation, MPI, nVidia, OpenMP, Physics, QCD, Tesla S1070

November 13, 2010 by hgpu

Enhanced molecular dynamics performance with a programmable graphics processor

D. C. Rapaport

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Tags: Chemistry, Computational chemistry, Computational Physics, CUDA, Molecular dynamics, nVidia, nVidia Quadro FX 770 M, Physics

November 13, 2010 by hgpu

The role of multigrid algorithms for LQCD

Ronald Babich, James Brannick, Richard C. Brower, Michael A. Clark, Saul D. Cohen, James C. Osborn, Claudio Rebbi

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Tags: CUDA, High Energy Physics - Lattice, Monte Carlo simulation, nVidia, nVidia GeForce GTX 280, Physics, QCD

November 13, 2010 by hgpu

QCD on GPUs: cost effective supercomputing

M. A. Clark

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Tags: High Energy Physics - Lattice, Monte Carlo simulation, nVidia, Physics, QCD, Review

November 13, 2010 by hgpu

Air pollution modelling using a graphics processing unit with CUDA

Ferenc Molnar Jr., Tamas Szakaly, Robert Meszaros, Istvan Lagzi

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Source codes

Tags: Computational Physics, CUDA, Earth and Space Sciences, Medical Physics, nVidia, nVidia GeForce 8800 GTS, nVidia GeForce 8800 GTX, Package, Physics

November 13, 2010 by hgpu

GPU-based Fast Low-dose Cone Beam CT Reconstruction via Total Variation

Xun Jia, Yifei Lou, John Lewis, Ruijiang Li, Xuejun Gu, Chunhua Men, William Y. Song, Steve B. Jiang

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Tags: Computed tomography, CT, CUDA, Image reconstruction, Medical Physics, nVidia, Physics, Tesla C1060

November 13, 2010 by hgpu

Real-time digital holographic microscopy observable in multi-view and multi-resolution

Tomoyoshi Shimobaba, Nobuyuki Masuda, Yasuyuki Ichihashi, Tomoyoshi Ito

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Source codes

Tags: Biological Physics, Computational Physics, Computer holography, CUDA, nVidia, nVidia GeForce GTX 295, Optics, Package, Physics

November 12, 2010 by hgpu

Fast calculation of computer-generated-hologram on AMD HD5000 series GPU and OpenCL

Tomoyoshi Shimobaba, Tomoyoshi Ito, Nobuyuki Masuda, Yasuyuki Ichihashi, Naoki Takada

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Tags: ATI, Computational Physics, nVidia, nVidia GeForce GTX 260, OpenCL, Optics, Physics, RV870

November 12, 2010 by hgpu

Langevin dynamics simulations of biomolecules on graphics processors

A. Zhmurov, R. I. Dima, Y. Kholodov, V. Barsegov

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Tags: Biological Physics, Biomolecules, Condensed matter, CUDA, Molecular dynamics, nVidia, nVidia GeForce GTX 295, Physics, Soft Condensed Matter

November 12, 2010 by hgpu

gpu_tracker: Context manager and CLI that tracks the computational-resource-usage of a code block or shell command, particularly the GPU usage

gpu_tracker: Python package for tracking and profiling GPU utilization in both desktop and high-performance computing environments

LOOPer: a polyhedral compiler for expressing fast and portable data parallel algorithms

LOOPer: A Learned Automatic Code Optimizer For Polyhedral Compilers

OpenMC Monte Carlo Code

Performance Portable Monte Carlo Particle Transport on Intel, NVIDIA, and AMD GPUs

Polygeist: C/C++ frontend for MLIR

Retargeting and Respecializing GPU Workloads for Performance Portability

Parallel Gaussian process with kernel approximation in CUDA

Optical flow algorithms for SYCL

SYCL in the edge: performance and energy evaluation for heterogeneous acceleration

OpenMP5-Offload-OpenMC-Intel-PVC

Distributed OpenMP Offloading of OpenMC on Intel GPU MAX Accelerators

See all packages

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high performance computing on graphics processing units: hgpu.org

GPU-based ultra fast dose calculation using a finite pencil beam model

Implementation and evaluation of various demons deformable image registration algorithms on GPU

Development of a GPU-based Monte Carlo dose calculation code for coupled electron-photon transport

TWQCD’s dynamical DWF project

Enhanced molecular dynamics performance with a programmable graphics processor

The role of multigrid algorithms for LQCD

QCD on GPUs: cost effective supercomputing

Air pollution modelling using a graphics processing unit with CUDA

GPU-based Fast Low-dose Cone Beam CT Reconstruction via Total Variation

Real-time digital holographic microscopy observable in multi-view and multi-resolution

Fast calculation of computer-generated-hologram on AMD HD5000 series GPU and OpenCL

Langevin dynamics simulations of biomolecules on graphics processors

Recent source codes

QArray

Celerity: High-level C++ for Accelerator Clusters

CIFAR-10 Airbench: 94% on CIFAR-10 in 3.29 second

gpu_tracker: Context manager and CLI that tracks the computational-resource-usage of a code block or shell command, particularly the GPU usage

LOOPer: a polyhedral compiler for expressing fast and portable data parallel algorithms

OpenMC Monte Carlo Code

Polygeist: C/C++ frontend for MLIR

Parallel Gaussian process with kernel approximation in CUDA

Optical flow algorithms for SYCL

OpenMP5-Offload-OpenMC-Intel-PVC

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