high performance computing on graphics processing units: hgpu.org

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On the efficiency of iterative ordered subset reconstruction algorithms for acceleration on GPUs

Fang Xu, Wei Xu, Mel Jones, Bettina Keszthelyi, John Sedat, David Agard, Klaus Mueller

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Tags: Cg, Computed tomography, CT, CUDA, Image reconstruction, Medicine, nVidia, nVidia GeForce 8800 GTX

November 28, 2010 by hgpu

Profile-guided optimization of critical medical imaging algorithms

David R. Kaeli, Byunghyun Jang, Perhaad Mistry, Dana Schaa

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Tags: Image processing, Image reconstruction, Optimization, Tomography

November 26, 2010 by hgpu

Interventional 4-D Motion Estimation and Reconstruction of Cardiac Vasculature without Motion Periodicity Assumption

C. Rohkohl, G. Lauritsch, L. Biller, M. Prummer, J. Boese, J. Hornegger

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Tags: CT, CUDA, Image reconstruction, Medicine, Motion compensation, nVidia, nVidia Quadro FX 5800

November 22, 2010 by hgpu

High-Performance Iterative Electron Tomography Reconstruction with Long-Object Compensation using Graphics Processing Units (GPUs)

Wei Xu, Fang Xu, Mel Jones, Bettina Keszthelyi, John Sedat, David Agard, Klaus Mueller

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Tags: Computed tomography, CT, CUDA, GLSL, Image processing, Image reconstruction, Medicine, nVidia, nVidia GeForce 7800 GTX, nVidia GeForce GTX 280, Tomography

November 19, 2010 by hgpu

GPU-enabled FREALIGN: Accelerating single particle 3D reconstruction and refinement in Fourier space on graphic processors

Xueming Li, Nikolaus Grigorieff, Yifan Cheng

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Tags: Biology, CUDA, Electron microscopy, Image reconstruction, nVidia, Package

November 18, 2010 by hgpu

Low cost, high performance GPU computing solution for atomic resolution cryoEM single-particle reconstruction

Xiaokang Zhang, Xing Zhang, Z. Hong Zhou

Tags: Biology, Cryo-EM, CUDA, Image reconstruction, nVidia

November 18, 2010 by hgpu

An adaptive Expectation-Maximization algorithm with GPU implementation for electron cryomicroscopy

Hemant D. Tagare, Andrew Barthel, Fred J. Sigworth

Tags: Algorithms, Biology, Cryo-EM, CUDA, Image reconstruction, nVidia

November 18, 2010 by hgpu

Accelerating simultaneous algebraic reconstruction technique with motion compensation using CUDA-enabled GPU

Wai-Man Pang, Jing Qin, Yuqiang Lu, Yongming Xie, Chee-Kong Chui, Pheng-Ann Heng

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Tags: Computed tomography, CT, CUDA, Image reconstruction, Medicine, Motion compensation, nVidia, nVidia GeForce 8800 GTX

November 17, 2010 by hgpu

GPU-Accelerated Robotic Intra-operative Laparoscopic 3D Reconstruction

Markus Moll, Hsiao-Wei Tang, Luc Van Gool

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Tags: Image reconstruction, Medicine, nVidia, nVidia GeForce 8800 GTS, nVidia GeForce 8800 GTX

November 16, 2010 by hgpu

GPU-based Fast Low-dose Cone Beam CT Reconstruction via Total Variation

Xun Jia, Yifei Lou, John Lewis, Ruijiang Li, Xuejun Gu, Chunhua Men, William Y. Song, Steve B. Jiang

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Tags: Computed tomography, CT, CUDA, Image reconstruction, Medical Physics, nVidia, Physics, Tesla C1060

November 13, 2010 by hgpu

GPU-based Fast Cone Beam CT Reconstruction from Undersampled and Noisy Projection Data via Total Variation

Xun Jia, Yifei Lou, Ruijiang Li, William Y. Song, Steve B. Jiang

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Tags: CT, CUDA, Image reconstruction, Medical Physics, Medicine, nVidia, Tesla C1060

November 12, 2010 by hgpu

Real-time volumetric image reconstruction and 3D tumor localization based on a single x-ray projection image for lung cancer radiotherapy

Ruijiang Li, Xun Jia, John H. Lewis, Xuejun Gu, Michael Folkerts, Chunhua Men, Steve B. Jiang

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Tags: CUDA, Image reconstruction, Medical Physics, Medicine, nVidia, Physics, Tesla C1060

November 12, 2010 by hgpu

gpu_tracker: Context manager and CLI that tracks the computational-resource-usage of a code block or shell command, particularly the GPU usage

gpu_tracker: Python package for tracking and profiling GPU utilization in both desktop and high-performance computing environments

LOOPer: a polyhedral compiler for expressing fast and portable data parallel algorithms

LOOPer: A Learned Automatic Code Optimizer For Polyhedral Compilers

OpenMC Monte Carlo Code

Performance Portable Monte Carlo Particle Transport on Intel, NVIDIA, and AMD GPUs

Polygeist: C/C++ frontend for MLIR

Retargeting and Respecializing GPU Workloads for Performance Portability

Parallel Gaussian process with kernel approximation in CUDA

Optical flow algorithms for SYCL

SYCL in the edge: performance and energy evaluation for heterogeneous acceleration

OpenMP5-Offload-OpenMC-Intel-PVC

Distributed OpenMP Offloading of OpenMC on Intel GPU MAX Accelerators

See all packages

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high performance computing on graphics processing units: hgpu.org

On the efficiency of iterative ordered subset reconstruction algorithms for acceleration on GPUs

Profile-guided optimization of critical medical imaging algorithms

Interventional 4-D Motion Estimation and Reconstruction of Cardiac Vasculature without Motion Periodicity Assumption

High-Performance Iterative Electron Tomography Reconstruction with Long-Object Compensation using Graphics Processing Units (GPUs)

GPU-enabled FREALIGN: Accelerating single particle 3D reconstruction and refinement in Fourier space on graphic processors

Low cost, high performance GPU computing solution for atomic resolution cryoEM single-particle reconstruction

An adaptive Expectation-Maximization algorithm with GPU implementation for electron cryomicroscopy

Accelerating simultaneous algebraic reconstruction technique with motion compensation using CUDA-enabled GPU

GPU-Accelerated Robotic Intra-operative Laparoscopic 3D Reconstruction

GPU-based Fast Low-dose Cone Beam CT Reconstruction via Total Variation

GPU-based Fast Cone Beam CT Reconstruction from Undersampled and Noisy Projection Data via Total Variation

Real-time volumetric image reconstruction and 3D tumor localization based on a single x-ray projection image for lung cancer radiotherapy

Recent source codes

QArray

Celerity: High-level C++ for Accelerator Clusters

CIFAR-10 Airbench: 94% on CIFAR-10 in 3.29 second

gpu_tracker: Context manager and CLI that tracks the computational-resource-usage of a code block or shell command, particularly the GPU usage

LOOPer: a polyhedral compiler for expressing fast and portable data parallel algorithms

OpenMC Monte Carlo Code

Polygeist: C/C++ frontend for MLIR

Parallel Gaussian process with kernel approximation in CUDA

Optical flow algorithms for SYCL

OpenMP5-Offload-OpenMC-Intel-PVC

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