high performance computing on graphics processing units: hgpu.org

hgpu.org » Medicine

Comprehensive Evaluations of Cone-beam CT dose in Image-guided Radiation Therapy via GPU-based Monte Carlo simulations

Davide Montanari, Enrica Scolari, Chiara Silvestri, Yan J. Graves, Hao Yan, Laura Cervino, Roger Rice, Steve B. Jiang, Xun Jia

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Tags: Computed tomography, CT, CUDA, Medical Physics, Medicine, Monte Carlo simulation, nVidia, nVidia GeForce GTX 590, Physics

September 20, 2013 by hgpu

Rethinking the Union of Computed Tomography Reconstruction and GPGPU Computing

Edward S. Jimenez, Laurel J. Orr

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Tags: Algorithms, Computed tomography, CT, CUDA, Medicine, nVidia, Tesla M2090, Tesla S2090, Tomography

September 20, 2013 by hgpu

Hybrid Monte Carlo CT Simulation on GPU

Gabor Jakab, Laszlo Szirmay-Kalos

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Tags: Algorithms, Computed tomography, CT, CUDA, Image reconstruction, Medicine, nVidia, nVidia GeForce GTX 590, Particle simulation, Tomography

September 16, 2013 by hgpu

OCT on CUDA: Speeding up the image reconstruction algorithm for an Optical Coherence Tomography system using NVIDIA’s CUDA platform

Amin Meyghani

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Tags: Algorithms, CUDA, Image reconstruction, Medicine, nVidia, nVidia Quadro 2000, Thesis, Tomography

September 11, 2013 by hgpu

Optimal Control Problem and Power-Efficient Medical Image Processing Using Puma

Himadri Nath Moulick, Moumita Ghosh

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Tags: Algorithms, CUDA, Image processing, Medicine, MRI, nVidia, nVidia GeForce GTX 280, Partial differential equations, PDEs

August 26, 2013 by hgpu

A Haptic Device Interface for Medical Simulations using OpenCL

Mattias Machwirth

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Tags: Algorithms, ATI, ATI Radeon HD 5750, ATI Radeon HD 7610 M, ATI Radeon HD 7970, Medicine, OpenCL, Thesis, Ultrasound, Visualization

August 14, 2013 by hgpu

GPU Accelerated Pattern Matching Algorithm for DNA Sequences to Detect Cancer using CUDA

Snehal P. Adey

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Tags: Bioinformatics, Biology, CUDA, Medicine, nVidia, Tesla C2070, Thesis

August 7, 2013 by hgpu

Iterative CT Reconstruction on the GPU

Gabor Jakab, Tamas Huszar, Balazs Csebfalvi

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Tags: Algorithms, Computed tomography, CT, CUDA, Image reconstruction, Medicine, nVidia, Tomography

July 31, 2013 by hgpu

Harnessing the GPU for Real-Time Haptic Tissue Simulation

C. E. Etheredge, E. E. Kunst, A. J. B. Sanders

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Tags: CUDA, Medicine, nVidia, Tesla C2050

July 29, 2013 by hgpu

Systematic Performance Optimization of Cone-Beam Back-Projection on the Kepler Architecture

Timo Zinsser, Benjamin Keck

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Tags: Computed tomography, CT, CUDA, Medicine, nVidia, nVidia GeForce GTX 680, Tesla C2070, Tomography

July 27, 2013 by hgpu

Parallel birth and death process for cell nuclei extraction in histopathology images

Christophe Avenel, Pierre Fortin, Dominique Bereziat

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Tags: Biology, CUDA, Medicine, nVidia, Tesla C2070

July 25, 2013 by hgpu

High Performance Implementation of Ultrasound Color Doppler Imaging on GPU platform

Thi Yen Phuong, Jeong-Gun Lee

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Tags: CUDA, Medicine, nVidia, nVidia GeForce GTX 560 Ti, nVidia GeForce GTX 660, Ultrasound

July 25, 2013 by hgpu

gpu_tracker: Context manager and CLI that tracks the computational-resource-usage of a code block or shell command, particularly the GPU usage

gpu_tracker: Python package for tracking and profiling GPU utilization in both desktop and high-performance computing environments

LOOPer: a polyhedral compiler for expressing fast and portable data parallel algorithms

LOOPer: A Learned Automatic Code Optimizer For Polyhedral Compilers

OpenMC Monte Carlo Code

Performance Portable Monte Carlo Particle Transport on Intel, NVIDIA, and AMD GPUs

Polygeist: C/C++ frontend for MLIR

Retargeting and Respecializing GPU Workloads for Performance Portability

Parallel Gaussian process with kernel approximation in CUDA

Optical flow algorithms for SYCL

SYCL in the edge: performance and energy evaluation for heterogeneous acceleration

OpenMP5-Offload-OpenMC-Intel-PVC

Distributed OpenMP Offloading of OpenMC on Intel GPU MAX Accelerators

See all packages

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high performance computing on graphics processing units: hgpu.org

Comprehensive Evaluations of Cone-beam CT dose in Image-guided Radiation Therapy via GPU-based Monte Carlo simulations

Rethinking the Union of Computed Tomography Reconstruction and GPGPU Computing

Hybrid Monte Carlo CT Simulation on GPU

OCT on CUDA: Speeding up the image reconstruction algorithm for an Optical Coherence Tomography system using NVIDIA’s CUDA platform

Optimal Control Problem and Power-Efficient Medical Image Processing Using Puma

A Haptic Device Interface for Medical Simulations using OpenCL

GPU Accelerated Pattern Matching Algorithm for DNA Sequences to Detect Cancer using CUDA

Iterative CT Reconstruction on the GPU

Harnessing the GPU for Real-Time Haptic Tissue Simulation

Systematic Performance Optimization of Cone-Beam Back-Projection on the Kepler Architecture

Parallel birth and death process for cell nuclei extraction in histopathology images

High Performance Implementation of Ultrasound Color Doppler Imaging on GPU platform

Recent source codes

QArray

Celerity: High-level C++ for Accelerator Clusters

CIFAR-10 Airbench: 94% on CIFAR-10 in 3.29 second

gpu_tracker: Context manager and CLI that tracks the computational-resource-usage of a code block or shell command, particularly the GPU usage

LOOPer: a polyhedral compiler for expressing fast and portable data parallel algorithms

OpenMC Monte Carlo Code

Polygeist: C/C++ frontend for MLIR

Parallel Gaussian process with kernel approximation in CUDA

Optical flow algorithms for SYCL

OpenMP5-Offload-OpenMC-Intel-PVC

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