high performance computing on graphics processing units: hgpu.org

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Ultra-fast FFT protein docking on graphics processors

David W. Ritchie, Vishwesh Venkatraman

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Tags: Bioinformatics, Biology, CUDA, FFT, nVidia, nVidia GeForce GTX 285

November 19, 2010 by hgpu

Domain Decomposition method on GPU cluster

Yusuke Osaki, Ken-Ichi Ishikawa

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Tags: CUDA, GPU cluster, High Energy Physics - Lattice, Mathematical Software, Monte Carlo simulation, nVidia, nVidia GeForce GTX 285, OpenMPI, Physics, QCD

November 16, 2010 by hgpu

GPU-based ultra fast dose calculation using a finite pencil beam model

Xuejun Gu, Dongju Choi, Chunhua Men, Hubert Pan, Amitava Majumdar, Steve B. Jiang

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Tags: CUDA, Medical Physics, Medicine, nVidia, nVidia GeForce 9500 GT, nVidia GeForce GTX 285, Physics, Radiotherapy, Tesla C1060, Tesla S1070

November 13, 2010 by hgpu

Implementation and evaluation of various demons deformable image registration algorithms on GPU

Xuejun Gu, Hubert Pan, Yun Liang, Richard Castillo, Deshan Yang, Dongju Choi, Edward Castillo, Amitava Majumdar, Thomas Guerrero, Steve B. Jiang

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Tags: CUDA, Image registration, Medical Physics, Medicine, nVidia, nVidia GeForce GTX 285, Physics, Radiotherapy

November 13, 2010 by hgpu

Stellar-mass black holes in star clusters: implications for gravitational wave radiation

Sambaran Banerjee, Holger Baumgardt, Pavel Kroupa

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Tags: Astrophysics, Black hole physics, Galaxy Astrophysics, Gravitational waves, High Energy Astrophysical Phenomena, N-body simulation, nVidia, nVidia GeForce 9800 GX2, nVidia GeForce GTX 280, nVidia GeForce GTX 285, Solar and Stellar Astrophysics, Stellar dynamics

November 13, 2010 by hgpu

Deterministic Sample Sort For GPUs

Frank Dehne, Hamidreza Zaboli

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Tags: Algorithms, Computational Complexity, Computer science, Data Structures and Algorithms, nVidia, nVidia GeForce GTX 260, nVidia GeForce GTX 285, Sorting

November 12, 2010 by hgpu

GPU-based ultra-fast direct aperture optimization for online adaptive radiation therapy

Chunhua Men, Xun Jia, Steve. B. Jiang

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Tags: CUDA, Medical Physics, Medicine, nVidia, nVidia GeForce 9500 GT, nVidia GeForce GTX 285, Physics, Radiotherapy, Tesla C1060

November 12, 2010 by hgpu

QYMSYM: A GPU-Accelerated Hybrid Symplectic Integrator That Permits Close Encounters

Alexander Moore, Alice C. Quillen

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Tags: Astrophysics, Celestial mechanics, CUDA, Earth and Planetary Astrophysics, Instrumentation and Methods for Astrophysics, nVidia, nVidia GeForce GTX 285, nVidia GeForce GTX 480, Package

November 10, 2010 by hgpu

Interactive Visualization of the Largest Radioastronomy Cubes

A.H. Hassan, C.J. Fluke, D.G. Barnes

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Tags: Astrophysics, CUDA, Instrumentation and Methods for Astrophysics, MPI, nVidia, nVidia GeForce GTX 285

November 10, 2010 by hgpu

Improving many flavor QCD simulations using multiple GPUs

M. Hayakawa, K.-I. Ishikawa, Y. Osaki, S. Takeda, S. Uno, N. Yamada

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Tags: CUDA, High Energy Physics - Lattice, Monte Carlo simulation, nVidia, nVidia GeForce GTX 285, OpenMP, Physics, QCD

November 9, 2010 by hgpu

Multi GPU Performance of Conjugate Gradient Algorithm with Staggered Fermions

Hyung-Jin Kim, Weonjong Lee

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Tags: CUDA, GPU cluster, High Energy Physics - Lattice, Monte Carlo simulation, MPI, nVidia, nVidia GeForce GTX 285, nVidia GeForce GTX 295, nVidia GeForce GTX 480, Physics, QCD, Tesla C2050

November 9, 2010 by hgpu

Implementation of the Neuberger-Dirac operator on GPUs

Bjoern Walk, Hartmut Wittig, Egor Dranischnikow, Elmar Schomer

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Tags: CUDA, High Energy Physics - Lattice, Monte Carlo simulation, nVidia, nVidia GeForce GTX 285, nVidia GeForce GTX 480, Physics, QCD, Tesla C2050

November 9, 2010 by hgpu

gpu_tracker: Context manager and CLI that tracks the computational-resource-usage of a code block or shell command, particularly the GPU usage

gpu_tracker: Python package for tracking and profiling GPU utilization in both desktop and high-performance computing environments

LOOPer: a polyhedral compiler for expressing fast and portable data parallel algorithms

LOOPer: A Learned Automatic Code Optimizer For Polyhedral Compilers

OpenMC Monte Carlo Code

Performance Portable Monte Carlo Particle Transport on Intel, NVIDIA, and AMD GPUs

Polygeist: C/C++ frontend for MLIR

Retargeting and Respecializing GPU Workloads for Performance Portability

Parallel Gaussian process with kernel approximation in CUDA

Optical flow algorithms for SYCL

SYCL in the edge: performance and energy evaluation for heterogeneous acceleration

OpenMP5-Offload-OpenMC-Intel-PVC

Distributed OpenMP Offloading of OpenMC on Intel GPU MAX Accelerators

See all packages

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high performance computing on graphics processing units: hgpu.org

Ultra-fast FFT protein docking on graphics processors

Domain Decomposition method on GPU cluster

GPU-based ultra fast dose calculation using a finite pencil beam model

Implementation and evaluation of various demons deformable image registration algorithms on GPU

Stellar-mass black holes in star clusters: implications for gravitational wave radiation

Deterministic Sample Sort For GPUs

GPU-based ultra-fast direct aperture optimization for online adaptive radiation therapy

QYMSYM: A GPU-Accelerated Hybrid Symplectic Integrator That Permits Close Encounters

Interactive Visualization of the Largest Radioastronomy Cubes

Improving many flavor QCD simulations using multiple GPUs

Multi GPU Performance of Conjugate Gradient Algorithm with Staggered Fermions

Implementation of the Neuberger-Dirac operator on GPUs

Recent source codes

QArray

Celerity: High-level C++ for Accelerator Clusters

CIFAR-10 Airbench: 94% on CIFAR-10 in 3.29 second

gpu_tracker: Context manager and CLI that tracks the computational-resource-usage of a code block or shell command, particularly the GPU usage

LOOPer: a polyhedral compiler for expressing fast and portable data parallel algorithms

OpenMC Monte Carlo Code

Polygeist: C/C++ frontend for MLIR

Parallel Gaussian process with kernel approximation in CUDA

Optical flow algorithms for SYCL

OpenMP5-Offload-OpenMC-Intel-PVC

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