{"id":13452,"date":"2015-02-10T20:59:49","date_gmt":"2015-02-10T18:59:49","guid":{"rendered":"http:\/\/hgpu.org\/?p=13452"},"modified":"2015-02-10T20:59:49","modified_gmt":"2015-02-10T18:59:49","slug":"cave-cl-an-opencl-version-of-the-package-for-detection-and-quantitative-analysis-of-internal-cavities-in-a-system-of-overlapping-balls-application-to-proteins","status":"publish","type":"post","link":"https:\/\/hgpu.org\/?p=13452","title":{"rendered":"CAVE-CL: An OpenCL version of the package for detection and quantitative analysis of internal cavities in a system of overlapping balls: application to proteins"},"content":{"rendered":"<p>Here we present the revised and newly rewritten version of our earlier published CAVE package [J. Busa et al., Comput. Phys. Commun. 181 (2010) 2116] which was originally written in FORTRAN. The package has been rewritten in C language, the algorithm has been parallelized and implemented using OpenCL. This makes the program convenient to run on platforms with Graphical Processing Units (GPUs). Improvements include also some modifications\/optimizations of the original algorithm. A considerable improvement in the performance of the code has been achieved. A new tool called input structure has been added which helps the user to make the data input and conversion more easier and universal.<\/p>\n","protected":false},"excerpt":{"rendered":"<p>Here we present the revised and newly rewritten version of our earlier published CAVE package [J. Busa et al., Comput. Phys. Commun. 181 (2010) 2116] which was originally written in FORTRAN. The package has been rewritten in C language, the algorithm has been parallelized and implemented using OpenCL. This makes the program convenient to run [&hellip;]<\/p>\n","protected":false},"author":351,"featured_media":0,"comment_status":"open","ping_status":"closed","sticky":false,"template":"","format":"standard","meta":{"_jetpack_memberships_contains_paid_content":false,"footnotes":"","jetpack_publicize_message":"","jetpack_publicize_feature_enabled":true,"jetpack_social_post_already_shared":true,"jetpack_social_options":{"image_generator_settings":{"template":"highway","default_image_id":0,"font":"","enabled":false},"version":2}},"categories":[36,10,90,3,12],"tags":[1787,1781,1687,989,20,953,1793,1783,199],"class_list":["post-13452","post","type-post","status-publish","format-standard","hentry","category-algorithms","category-biology","category-opencl","category-paper","category-physics","tag-algorithms","tag-biology","tag-computer-physics","tag-fortran","tag-nvidia","tag-nvidia-geforce-gtx-470","tag-opencl","tag-physics","tag-tesla-c1060"],"views":2543,"jetpack_publicize_connections":[],"jetpack_featured_media_url":"","jetpack_sharing_enabled":true,"_links":{"self":[{"href":"https:\/\/hgpu.org\/index.php?rest_route=\/wp\/v2\/posts\/13452","targetHints":{"allow":["GET"]}}],"collection":[{"href":"https:\/\/hgpu.org\/index.php?rest_route=\/wp\/v2\/posts"}],"about":[{"href":"https:\/\/hgpu.org\/index.php?rest_route=\/wp\/v2\/types\/post"}],"author":[{"embeddable":true,"href":"https:\/\/hgpu.org\/index.php?rest_route=\/wp\/v2\/users\/351"}],"replies":[{"embeddable":true,"href":"https:\/\/hgpu.org\/index.php?rest_route=%2Fwp%2Fv2%2Fcomments&post=13452"}],"version-history":[{"count":0,"href":"https:\/\/hgpu.org\/index.php?rest_route=\/wp\/v2\/posts\/13452\/revisions"}],"wp:attachment":[{"href":"https:\/\/hgpu.org\/index.php?rest_route=%2Fwp%2Fv2%2Fmedia&parent=13452"}],"wp:term":[{"taxonomy":"category","embeddable":true,"href":"https:\/\/hgpu.org\/index.php?rest_route=%2Fwp%2Fv2%2Fcategories&post=13452"},{"taxonomy":"post_tag","embeddable":true,"href":"https:\/\/hgpu.org\/index.php?rest_route=%2Fwp%2Fv2%2Ftags&post=13452"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}