{"id":14121,"date":"2015-06-17T20:25:30","date_gmt":"2015-06-17T17:25:30","guid":{"rendered":"http:\/\/hgpu.org\/?p=14121"},"modified":"2015-06-17T20:25:30","modified_gmt":"2015-06-17T17:25:30","slug":"rumd-a-general-purpose-molecular-dynamics-package-optimized-to-utilize-gpu-hardware-down-to-a-few-thousand-particles","status":"publish","type":"post","link":"https:\/\/hgpu.org\/?p=14121","title":{"rendered":"RUMD: A general purpose molecular dynamics package optimized to utilize GPU hardware down to a few thousand particles"},"content":{"rendered":"<p>RUMD is a general purpose, high-performance molecular dynamics (MD) simulation package running on graphical processing units (GPU&#8217;s). RUMD addresses the challenge of utilizing the many-core nature of modern GPU hardware when simulating small to medium system sizes (roughly from a few thousand up to hundred thousand particles). It has a performance that is comparable to other GPU-MD codes at large system sizes and substantially better at smaller sizes. RUMD is open-source and consists of a library written in C++ and the CUDA extension to C, an easy-to-use Python interface, and a set of tools for set-up and post-simulation data analysis. The paper describes RUMD&#8217;s main features, optimizations and performance benchmarks.<\/p>\n","protected":false},"excerpt":{"rendered":"<p>RUMD is a general purpose, high-performance molecular dynamics (MD) simulation package running on graphical processing units (GPU&#8217;s). RUMD addresses the challenge of utilizing the many-core nature of modern GPU hardware when simulating small to medium system sizes (roughly from a few thousand up to hundred thousand particles). It has a performance that is comparable to [&hellip;]<\/p>\n","protected":false},"author":351,"featured_media":0,"comment_status":"open","ping_status":"closed","sticky":false,"template":"","format":"standard","meta":{"_jetpack_memberships_contains_paid_content":false,"footnotes":"","jetpack_publicize_message":"","jetpack_publicize_feature_enabled":true,"jetpack_social_post_already_shared":true,"jetpack_social_options":{"image_generator_settings":{"template":"highway","default_image_id":0,"font":"","enabled":false},"version":2}},"categories":[89,3,12],"tags":[98,14,112,20,1601,176,1783,513],"class_list":["post-14121","post","type-post","status-publish","format-standard","hentry","category-nvidia-cuda","category-paper","category-physics","tag-computational-physics","tag-cuda","tag-molecular-dynamics","tag-nvidia","tag-nvidia-geforce-gtx-780-ti","tag-package","tag-physics","tag-python"],"views":2483,"jetpack_publicize_connections":[],"jetpack_featured_media_url":"","jetpack_sharing_enabled":true,"_links":{"self":[{"href":"https:\/\/hgpu.org\/index.php?rest_route=\/wp\/v2\/posts\/14121","targetHints":{"allow":["GET"]}}],"collection":[{"href":"https:\/\/hgpu.org\/index.php?rest_route=\/wp\/v2\/posts"}],"about":[{"href":"https:\/\/hgpu.org\/index.php?rest_route=\/wp\/v2\/types\/post"}],"author":[{"embeddable":true,"href":"https:\/\/hgpu.org\/index.php?rest_route=\/wp\/v2\/users\/351"}],"replies":[{"embeddable":true,"href":"https:\/\/hgpu.org\/index.php?rest_route=%2Fwp%2Fv2%2Fcomments&post=14121"}],"version-history":[{"count":0,"href":"https:\/\/hgpu.org\/index.php?rest_route=\/wp\/v2\/posts\/14121\/revisions"}],"wp:attachment":[{"href":"https:\/\/hgpu.org\/index.php?rest_route=%2Fwp%2Fv2%2Fmedia&parent=14121"}],"wp:term":[{"taxonomy":"category","embeddable":true,"href":"https:\/\/hgpu.org\/index.php?rest_route=%2Fwp%2Fv2%2Fcategories&post=14121"},{"taxonomy":"post_tag","embeddable":true,"href":"https:\/\/hgpu.org\/index.php?rest_route=%2Fwp%2Fv2%2Ftags&post=14121"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}