high performance computing on graphics processing units: hgpu.org

Markov-Chain Monte-Carlo (MCMC) methods are an important class of simulation techniques, which execute a sequence of simulation steps, where each new step depends on the previous ones. Due to this fundamental dependency, MCMC methods are inherently hard to parallelize on any architecture. The upcoming generations of hybrid CPU/GPGPU architectures with their multi-core CPUs and tightly […]

Ambient occlusion techniques were introduced to improve data comprehension by bringing soft fading shadows to the visualization of 3D datasets. They consist in attenuating light by considering the occlusion resulting from the presence of neighboring structures. Nevertheless they often come with an important precomputation cost, which prevents their use in interactive applications based on transfer […]

Modern processor architectures, in addition to having still more cores, also require still more consideration to memory-layout in order to run at full capacity. The usefulness of most languages is deprecating as their abstractions, structures or objects are hard to map onto modern processor architectures efficiently. The work in this paper introduces a new abstract […]

Modern processors are evolving into hybrid, heterogeneous processors with both CPU and GPU cores used for general purpose computation. Several languages, such as BrookGPU, CUDA, and more recently OpenCL, have been developed to harness the potential of these processors. These languages typically involve control code running on a host CPU, while performance-critical, massively data-parallel kernel […]

In this work, a novel graphics processing unit (GPU) distributed sharing model for hybrid many-core architectures is introduced and employed in the acceleration of a production-level computational fluid dynamics (CFD) code. The latest generation graphics hardware allows multiple processor cores to simultaneously share a single GPU through concurrent kernel execution. This feature has allowed the […]

Quantum.Ligand.Dock (protein-ligand docking with graphic processing unit (GPU) quantum entanglement refinement on a GPU system) is an original modern method for in silico prediction of protein-ligand interactions via high-performance docking code. The main flavour of our approach is a combination of fast search with a special account for overlooked physical interactions. On the one hand, […]

For many-core architectures like the GPUs, efficient off-chip memory access is crucial to high performance; the applications are often limited by off-chip memory bandwidth. Transforming data layout is an effective way to reshape the access patterns to improve off-chip memory access behavior, but several challenges had limited the use of automated data layout transformation systems […]

The efficient solution of the Frank-Kamenetskii partial differential equation through the implementation of parallelized numerical algorithms or GPUs (Graphics Processing Units) in MATLAB is a natural progression of the work which has been conducted in an area of practical import. There is an on-going interest in the mathematics describing thermal explosions due to the significance […]

This paper introduces a library which supports programmers to write parallel programs on GPU architecture, especially with a system consisting of multi-GPUs. The library is designed from the idea of skeletons, which helps us to make parallel programs easily and quickly as if writing sequential programs. Skeletons usually are described by functional language which supports […]

In this paper we introduce a method for computing fitness in evolutionary learning systems based on NVIDIA’s massive parallel technology using the CUDA library. Both the match process of a population of classifiers against a training set and the computation of the fitness of each classifier from its matches have been parallelized. This method has […]

Time series shapelet discovery algorithm finds subsequences from a set of time series for use as primitives for time series classification. This algorithm has drawn a lot of interest because of the interpretability of its results. However, computation requirements restrict the algorithm from dealing with large data sets and may limit its application in many […]

In program inference, the evaluation of how well a candidate solution solves a certain task is usually a computationally intensive procedure. Most of the time, the evaluation involves either submitting the program to a simulation process or testing its behavior on many input arguments; both situations may turn out to be very time-consuming. Things get […]