high performance computing on graphics processing units: hgpu.org

Tommaso Biagini, Giovanni Chillemi, Gianluigi Mazzoccoli, Alessandro Grottesi, Caterina Fusilli, Daniele Capocefalo, Stefano Castellana, Angelo Luigi Vescovi, Tommaso Mazza

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Tags: Benchmarking, Bioinformatics, Biology, Chemistry, CUDA, Genomics, Molecular dynamics, nVidia, OpenCL, Physics, Tesla C2070

December 19, 2017 by hgpu

HCudaBLAST: an implementation of BLAST on Hadoop and Cuda

Nilay Khare, Alind Khare and Farhan Khan

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Tags: Algorithms, Bioinformatics, Biology, BLAST, CUDA, Hadoop, nVidia, nVidia Quadro 2000, nVidia Quadro 600, Tesla C2075

December 3, 2017 by hgpu

A Hybrid-parallel Architecture for Applications in Bioinformatics

Jan Christian Kassens

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Tags: Algorithms, Bioinformatics, Biology, Computer science, CUDA, FPGA, nVidia, nVidia GeForce GTX 780 Ti, Thesis

December 3, 2017 by hgpu

High Performance Streaming Smith-Waterman Implementation with Implicit Synchronization on Intel FPGA using OpenCL

Ernst Joachim Houtgast, Vlad-Mihai Sima, Zaid Al-Ars

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Tags: Algorithms, Bioinformatics, Biology, FPGA, OpenCL, Smith-Waterman algorithm

November 26, 2017 by hgpu

Accelerating Genomics Research with OpenCL and FPGAs

Chris Rauer, George S. Powley, Mir Ahsan, Nicholas Finamore

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Tags: Algorithms, Biology, Computer science, FPGA, Genomics, OpenCL

October 15, 2017 by hgpu

Dynamic Parallelism in GPU Optimized Barnes Hut Trees for Molecular Dynamics Simulations

Melisa Carranza Zuniga

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Tags: Algorithms, Biology, Biomolecules, Biophysics, Chemistry, CUDA, Molecular dynamics, nVidia, nVidia GeForce GTX 480, Physics, Thesis

August 26, 2017 by hgpu

Hierarchical Product Quantization for Approximate Nearest Neighbors Search

Accelerated Approximate Nearest Neighbors Search Through Hierarchical Product Quantization

hlslib: A collection of extensions for Vivado HLS and Intel FPGA OpenCL to improve developer quality of life

hlslib: Software Engineering for Hardware Design

Taichi: A Language for High-Performance Computation on Spatially Sparse Data Structures

MCL kernel verification library

Verification of GPU Program Optimizations in Lean

waLBerla: A block-structured high-performance framework for multiphysics simulations

MIOpen: AMD's Machine Intelligence Library

MIOpen: An Open Source Library For Deep Learning Primitives

horovod: Distributed training framework for TensorFlow, Keras, PyTorch, and Apache MXNet

Exascale Deep Learning for Scientific Inverse Problems

Futhark Vulkan Backend

Megatron-LM: Ongoing research training transformer language models at scale, including: BERT & GPT-2

Megatron-LM: Training Multi-Billion Parameter Language Models Using Model Parallelism

Espresso: A Fast End-to-End Neural Speech Recognition Toolkit

Espresso: A Fast End-to-end Neural Speech Recognition Toolkit

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2019

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13-15

Boston, USA

7th International Workshop on OpenCL, 2019

2019

May

Boston, MA, USA

Distributed Heterogeneous Programming in C/C++ (DHPCC++), 2019

2019

May

Larnaca, Cyprus

3rd International Workshop on Theoretical Approaches to Performance Evaluation, Modeling and Simulation (TAPEMS), 2019

2019

July

26-28

Rome, Italy

International Conference on Frontiers of Neural Networks (ICFNN), 2019

2019

July

26-28

Rome, Italy

International Conference on Frontiers of Artificial Intelligence and Machine Learning (FAIML), 2019

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high performance computing on graphics processing units: hgpu.org

Applications

Parallel scalable simulations of biological neural networks using TensorFlow: A beginner’s guide

ASW: Accelerating Smith-Waterman Algorithm on Coupled CPU-GPU Architecture

SWIFOLD: Smith-Waterman implementation on FPGA with OpenCL for long DNA sequences

Interactive GPU active contours for segmenting inhomogeneous objects

Fast and Flexible GPU Accelerated Binding Free Energy Calculations within the AMBER Molecular Dynamics Package

pyPaSWAS: Python-based multi-core CPU and GPU sequence alignment

Molecular dynamics recipes for genome research

HCudaBLAST: an implementation of BLAST on Hadoop and Cuda

A Hybrid-parallel Architecture for Applications in Bioinformatics

High Performance Streaming Smith-Waterman Implementation with Implicit Synchronization on Intel FPGA using OpenCL

Accelerating Genomics Research with OpenCL and FPGAs

Dynamic Parallelism in GPU Optimized Barnes Hut Trees for Molecular Dynamics Simulations

Recent source codes

Hierarchical Product Quantization for Approximate Nearest Neighbors Search

hlslib: A collection of extensions for Vivado HLS and Intel FPGA OpenCL to improve developer quality of life

Taichi: A Language for High-Performance Computation on Spatially Sparse Data Structures

MCL kernel verification library

waLBerla: A block-structured high-performance framework for multiphysics simulations

MIOpen: AMD's Machine Intelligence Library

horovod: Distributed training framework for TensorFlow, Keras, PyTorch, and Apache MXNet

Futhark Vulkan Backend

Megatron-LM: Ongoing research training transformer language models at scale, including: BERT & GPT-2

Espresso: A Fast End-to-End Neural Speech Recognition Toolkit

Most viewed papers (last 30 days)

Featured events

7th International Workshop on OpenCL, 2019

Distributed Heterogeneous Programming in C/C++ (DHPCC++), 2019

3rd International Workshop on Theoretical Approaches to Performance Evaluation, Modeling and Simulation (TAPEMS), 2019

International Conference on Frontiers of Neural Networks (ICFNN), 2019

International Conference on Frontiers of Artificial Intelligence and Machine Learning (FAIML), 2019