high performance computing on graphics processing units: hgpu.org

Tommaso Biagini, Giovanni Chillemi, Gianluigi Mazzoccoli, Alessandro Grottesi, Caterina Fusilli, Daniele Capocefalo, Stefano Castellana, Angelo Luigi Vescovi, Tommaso Mazza

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Tags: Benchmarking, Bioinformatics, Biology, Chemistry, CUDA, Genomics, Molecular dynamics, nVidia, OpenCL, Physics, Tesla C2070

December 19, 2017 by hgpu

HCudaBLAST: an implementation of BLAST on Hadoop and Cuda

Nilay Khare, Alind Khare and Farhan Khan

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Tags: Algorithms, Bioinformatics, Biology, BLAST, CUDA, Hadoop, nVidia, nVidia Quadro 2000, nVidia Quadro 600, Tesla C2075

December 3, 2017 by hgpu

A Hybrid-parallel Architecture for Applications in Bioinformatics

Jan Christian Kassens

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Tags: Algorithms, Bioinformatics, Biology, Computer science, CUDA, FPGA, nVidia, nVidia GeForce GTX 780 Ti, Thesis

December 3, 2017 by hgpu

High Performance Streaming Smith-Waterman Implementation with Implicit Synchronization on Intel FPGA using OpenCL

Ernst Joachim Houtgast, Vlad-Mihai Sima, Zaid Al-Ars

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Tags: Algorithms, Bioinformatics, Biology, FPGA, OpenCL, Smith-Waterman algorithm

November 26, 2017 by hgpu

Accelerating Genomics Research with OpenCL and FPGAs

Chris Rauer, George S. Powley, Mir Ahsan, Nicholas Finamore

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Tags: Algorithms, Biology, Computer science, FPGA, Genomics, OpenCL

October 15, 2017 by hgpu

Dynamic Parallelism in GPU Optimized Barnes Hut Trees for Molecular Dynamics Simulations

Melisa Carranza Zuniga

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Tags: Algorithms, Biology, Biomolecules, Biophysics, Chemistry, CUDA, Molecular dynamics, nVidia, nVidia GeForce GTX 480, Physics, Thesis

August 26, 2017 by hgpu

eccCL: parallelized GPU implementation of Ensemble Classifier Chains

Mona Riemenschneider, Alexander Herbst, Ari Rasch, Sergei Gorlatch, Dominik Heider

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Source codes

Tags: Biology, Computer science, Java, Next-Generation sequencing, nVidia, OpenCL, Package, R, Tesla K20

August 26, 2017 by hgpu

SYCL-DNN: The SYCL-DNN neural network acceleration library

Accelerated Neural Networks on OpenCL Devices Using SYCL-DNN

OpenCL vs: Accelerated Finite-Difference Digital Synthesis

SYCL-BLAS: An implementation of BLAS using the SYCL open standard for acceleration on OpenCL devices

Cross-Platform Performance Portability Using Highly Parametrized SYCL Kernels

High Performance Monte Carlo Simulation of Ising Model on TPU Clusters

SkePU2: Autotunable Multi-Backend Skeleton Programming Framework for Multicore CPU and Multi-GPU Systems

Hybrid CPU-GPU execution support in the skeleton programming framework SkePU

HeteroMap: Performance Predictors for Graph Analytics

HeteroMap: A Runtime Performance Predictor for Efficient Processing of Graph Analytics on Heterogeneous Multi-Accelerators

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2019

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13-15

Boston, USA

7th International Workshop on OpenCL, 2019

2019

May

Boston, MA, USA

Distributed Heterogeneous Programming in C/C++ (DHPCC++), 2019

2019

May

Larnaca, Cyprus

3rd International Workshop on Theoretical Approaches to Performance Evaluation, Modeling and Simulation (TAPEMS), 2019

2019

July

26-28

Rome, Italy

International Conference on Frontiers of Neural Networks (ICFNN), 2019

2019

July

26-28

Rome, Italy

International Conference on Frontiers of Artificial Intelligence and Machine Learning (FAIML), 2019

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high performance computing on graphics processing units: hgpu.org

Applications

ASW: Accelerating Smith-Waterman Algorithm on Coupled CPU-GPU Architecture

SWIFOLD: Smith-Waterman implementation on FPGA with OpenCL for long DNA sequences

Interactive GPU active contours for segmenting inhomogeneous objects

Fast and Flexible GPU Accelerated Binding Free Energy Calculations within the AMBER Molecular Dynamics Package

pyPaSWAS: Python-based multi-core CPU and GPU sequence alignment

Molecular dynamics recipes for genome research

HCudaBLAST: an implementation of BLAST on Hadoop and Cuda

A Hybrid-parallel Architecture for Applications in Bioinformatics

High Performance Streaming Smith-Waterman Implementation with Implicit Synchronization on Intel FPGA using OpenCL

Accelerating Genomics Research with OpenCL and FPGAs

Dynamic Parallelism in GPU Optimized Barnes Hut Trees for Molecular Dynamics Simulations

eccCL: parallelized GPU implementation of Ensemble Classifier Chains

Recent source codes

SYCL-DNN: The SYCL-DNN neural network acceleration library

OpenCL vs: Accelerated Finite-Difference Digital Synthesis

SYCL-BLAS: An implementation of BLAS using the SYCL open standard for acceleration on OpenCL devices

High Performance Monte Carlo Simulation of Ising Model on TPU Clusters

The Study of the OpenCL Processing Models for the FPGA Device

TonY: a framework to natively run deep learning frameworks on Apache Hadoop

fairseq: Facebook AI Research Sequence-to-Sequence Toolkit written in Python

mARGOt: Dynamic Application Autotuning for Self-Aware Approximate Computing

SkePU2: Autotunable Multi-Backend Skeleton Programming Framework for Multicore CPU and Multi-GPU Systems

HeteroMap: Performance Predictors for Graph Analytics

Most viewed papers (last 30 days)

Featured events

7th International Workshop on OpenCL, 2019

Distributed Heterogeneous Programming in C/C++ (DHPCC++), 2019

3rd International Workshop on Theoretical Approaches to Performance Evaluation, Modeling and Simulation (TAPEMS), 2019

International Conference on Frontiers of Neural Networks (ICFNN), 2019

International Conference on Frontiers of Artificial Intelligence and Machine Learning (FAIML), 2019