high performance computing on graphics processing units: hgpu.org

Tommaso Biagini, Giovanni Chillemi, Gianluigi Mazzoccoli, Alessandro Grottesi, Caterina Fusilli, Daniele Capocefalo, Stefano Castellana, Angelo Luigi Vescovi, Tommaso Mazza

View

Download (PDF)

Tags: Benchmarking, Bioinformatics, Biology, Chemistry, CUDA, Genomics, Molecular dynamics, nVidia, OpenCL, Physics, Tesla C2070

December 19, 2017 by hgpu

Dynamic Parallelism in GPU Optimized Barnes Hut Trees for Molecular Dynamics Simulations

Melisa Carranza Zuniga

View

Download (PDF)

Tags: Algorithms, Biology, Biomolecules, Biophysics, Chemistry, CUDA, Molecular dynamics, nVidia, nVidia GeForce GTX 480, Physics, Thesis

August 26, 2017 by hgpu

Easy and Efficient Transformer: Scalable Inference Solution For large NLP mode

Ripple: Simplified Large-Scale Computation on Heterogeneous Architectures with Polymorphic Data Layout

Efficient Video Compression via Content-Adaptive Super-Resolution

CUDA Modular Polynomial (CUMODP) Library

Parallel Arbitrary-precision Integer Arithmetic

Energy-aware Task Scheduling with Deadline Constraint in DVFS-enabled Heterogeneous Clusters

See all packages

* * *

2021

April

27-29

Munich, Germany

9th International Workshop on OpenCL and SYCL, 2021

2020

December

10-14

Virtually in Barcelona, Spain

The 18th International Conference on High Performance Computing & Simulation (HPCS), 2020

2020

November

24-27

Naha, Okinawa, Japan

The Fifth International Workshop on GPU Computing and AI (GCA), 2020

2021

January

13-15

Shenzhen, China

2nd International Conference on Frontiers of Intelligent Manufacturing and Automation (CFIMA’21), 2021

2020

December

14-16

Bangkok, Thailand

International Conference on Cyber Physical Systems and IoT (CPSIOT’20), 2020

Add event

See all events

high performance computing on graphics processing units: hgpu.org

Applications

Accelerating AutoDock4 with GPUs and Gradient-Based Local Search

Heterogeneous Parallelization and Acceleration of Molecular Dynamics Simulations in GROMACS

Evaluating the Energy Efficiency of OpenCL-accelerated AutoDock Molecular Docking

JAX, M.D.: End-to-End Differentiable, Hardware Accelerated, Molecular Dynamics in Pure Python

libmolgrid: GPU Accelerated Molecular Gridding for Deep Learning Applications

Code Optimization on GPUs

Using Compiler Directives for Performance Portability in Scientific Computing: Kernels from Molecular Simulation

A Case Study in Using OpenCL on FPGAs: Creating an Open-Source Accelerator of the AutoDock Molecular Docking Software

Chebyshev Filter Diagonalization on Modern Manycore Processors and GPGPUs

GAMER-2: a GPU-accelerated adaptive mesh refinement code — accuracy, performance, and scalability

Molecular dynamics recipes for genome research

Dynamic Parallelism in GPU Optimized Barnes Hut Trees for Molecular Dynamics Simulations

Recent source codes

Easy and Efficient Transformer: Scalable Inference Solution For large NLP mode

Ripple: Simplified Large-Scale Computation on Heterogeneous Architectures with Polymorphic Data Layout

CrypTen: a framework for Privacy Preserving Machine Learning built on PyTorch

SLATE: Software for Linear Algebra Targeting Exascale project

MG-CFD OP2

Megatron

pharos: performance monitoring instrumentation for multi-FPGA systems

Efficient Video Compression via Content-Adaptive Super-Resolution

CUDA Modular Polynomial (CUMODP) Library

Energy-aware Task Scheduling with Deadline Constraint in DVFS-enabled Heterogeneous Clusters

Most viewed papers (last 30 days)

Featured events

9th International Workshop on OpenCL and SYCL, 2021

The 18th International Conference on High Performance Computing & Simulation (HPCS), 2020

The Fifth International Workshop on GPU Computing and AI (GCA), 2020

2nd International Conference on Frontiers of Intelligent Manufacturing and Automation (CFIMA’21), 2021

International Conference on Cyber Physical Systems and IoT (CPSIOT’20), 2020