high performance computing on graphics processing units: hgpu.org

Tommaso Biagini, Giovanni Chillemi, Gianluigi Mazzoccoli, Alessandro Grottesi, Caterina Fusilli, Daniele Capocefalo, Stefano Castellana, Angelo Luigi Vescovi, Tommaso Mazza

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Tags: Benchmarking, Bioinformatics, Biology, Chemistry, CUDA, Genomics, Molecular dynamics, nVidia, OpenCL, Physics, Tesla C2070

December 19, 2017 by hgpu

Dynamic Parallelism in GPU Optimized Barnes Hut Trees for Molecular Dynamics Simulations

Melisa Carranza Zuniga

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Tags: Algorithms, Biology, Biomolecules, Biophysics, Chemistry, CUDA, Molecular dynamics, nVidia, nVidia GeForce GTX 480, Physics, Thesis

August 26, 2017 by hgpu

An efficient MPI/OpenMP parallelization of the Hartree-Fock method for the second generation of Intel Xeon Phi processor

Vladimir Mironov, Yuri Alexeev, Kristopher Keipert, Michael D'mello, Alexander Moskovsky, Mark S. Gordon

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Tags: Algorithms, Benchmarking, Chemistry, Computer science, Intel Xeon Phi, MPI, OpenMP, Physics

August 8, 2017 by hgpu

Extending High-Level Synthesis for Task-Parallel Programs

pyschedcl-concurrent: A Scheduling Framework that leverages concurrency in data parallel systems

PySchedCL: Leveraging Concurrency in Heterogeneous Data-Parallel Systems

HPX - The C++ Standard Library for Parallelism and Concurrency

HPX – The C++ Standard Library for Parallelism and Concurrency

CS Roofline Toolkit

Accelerating High-Order Stencils on GPUs

Hierarchical Roofline Analysis: How to Collect Data using Performance Tools on Intel CPUs and NVIDIA GPUs

Towards automated kernel selection in machine learning systems: Supplementary code and dataset

Performance portability through machine learning guided kernel selection in SYCL libraries

Montage: A Neural Network Language Model-Guided JavaScript Engine Fuzzer

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2020

December

10-14

Virtually in Barcelona, Spain

The 18th International Conference on High Performance Computing & Simulation (HPCS), 2020

2020

November

24-27

Naha, Okinawa, Japan

The Fifth International Workshop on GPU Computing and AI (GCA), 2020

2021

January

13-15

Shenzhen, China

2nd International Conference on Frontiers of Intelligent Manufacturing and Automation (CFIMA’21), 2021

2020

December

14-16

Bangkok, Thailand

International Conference on Cyber Physical Systems and IoT (CPSIOT’20), 2020

2020

December

14-16

Bangkok, Thailand

International Conference on Wireless Networks and Embedded Systems (ICWNES’20), 2020

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high performance computing on graphics processing units: hgpu.org

Applications

Heterogeneous Parallelization and Acceleration of Molecular Dynamics Simulations in GROMACS

Evaluating the Energy Efficiency of OpenCL-accelerated AutoDock Molecular Docking

JAX, M.D.: End-to-End Differentiable, Hardware Accelerated, Molecular Dynamics in Pure Python

libmolgrid: GPU Accelerated Molecular Gridding for Deep Learning Applications

Code Optimization on GPUs

Using Compiler Directives for Performance Portability in Scientific Computing: Kernels from Molecular Simulation

A Case Study in Using OpenCL on FPGAs: Creating an Open-Source Accelerator of the AutoDock Molecular Docking Software

Chebyshev Filter Diagonalization on Modern Manycore Processors and GPGPUs

GAMER-2: a GPU-accelerated adaptive mesh refinement code — accuracy, performance, and scalability

Molecular dynamics recipes for genome research

Dynamic Parallelism in GPU Optimized Barnes Hut Trees for Molecular Dynamics Simulations

An efficient MPI/OpenMP parallelization of the Hartree-Fock method for the second generation of Intel Xeon Phi processor

Recent source codes

Extending High-Level Synthesis for Task-Parallel Programs

PyTransit

T81 558: Applications of Deep Neural Networks

Voxelization Using Optimal Scanline

pyschedcl-concurrent: A Scheduling Framework that leverages concurrency in data parallel systems

HPX - The C++ Standard Library for Parallelism and Concurrency

CS Roofline Toolkit

Hierarchical Roofline Analysis: How to Collect Data using Performance Tools on Intel CPUs and NVIDIA GPUs

Towards automated kernel selection in machine learning systems: Supplementary code and dataset

Montage: A Neural Network Language Model-Guided JavaScript Engine Fuzzer

Most viewed papers (last 30 days)

Featured events

The 18th International Conference on High Performance Computing & Simulation (HPCS), 2020

The Fifth International Workshop on GPU Computing and AI (GCA), 2020

2nd International Conference on Frontiers of Intelligent Manufacturing and Automation (CFIMA’21), 2021

International Conference on Cyber Physical Systems and IoT (CPSIOT’20), 2020

International Conference on Wireless Networks and Embedded Systems (ICWNES’20), 2020