high performance computing on graphics processing units: hgpu.org

Tommaso Biagini, Giovanni Chillemi, Gianluigi Mazzoccoli, Alessandro Grottesi, Caterina Fusilli, Daniele Capocefalo, Stefano Castellana, Angelo Luigi Vescovi, Tommaso Mazza

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Tags: Benchmarking, Bioinformatics, Biology, Chemistry, CUDA, Genomics, Molecular dynamics, nVidia, OpenCL, Physics, Tesla C2070

December 19, 2017 by hgpu

Dynamic Parallelism in GPU Optimized Barnes Hut Trees for Molecular Dynamics Simulations

Melisa Carranza Zuniga

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Tags: Algorithms, Biology, Biomolecules, Biophysics, Chemistry, CUDA, Molecular dynamics, nVidia, nVidia GeForce GTX 480, Physics, Thesis

August 26, 2017 by hgpu

An efficient MPI/OpenMP parallelization of the Hartree-Fock method for the second generation of Intel Xeon Phi processor

Vladimir Mironov, Yuri Alexeev, Kristopher Keipert, Michael D'mello, Alexander Moskovsky, Mark S. Gordon

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Tags: Algorithms, Benchmarking, Chemistry, Computer science, Intel Xeon Phi, MPI, OpenMP, Physics

August 8, 2017 by hgpu

OpenABLext: An extension to OpenABL, a framework to generate high- performance code for agent-based simulations

OpenABLext: An automatic code generation framework for agent-based simulations on CPU-GPU-FPGA heterogeneous platforms

SOFF: SNU OpenCL Framework for FPGAs

SOFF: An OpenCL High-Level Synthesis Framework for FPGAs

GCOOSpDM: Sparse-dense matrix-matrix multiplication on GPUs

Efficient Sparse-Dense Matrix-Matrix Multiplication on GPUs Using the Customized Sparse Storage Format

Programming Your GPU with OpenMP: A Hands-On Introduction

Evaluating the performance of HPC-style SYCL applications

sycl-bench: SYCL Benchmark Suite

SYCL-Bench: A Versatile Single-Source Benchmark Suite for Heterogeneous Computing

BlaBla: A Python package for clinical linguistic feature extraction in multiple languages

BlaBla: Linguistic Feature Extraction for Clinical Analysis in Multiple Languages

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2020

November

24-27

Naha, Okinawa, Japan

The Fifth International Workshop on GPU Computing and AI (GCA), 2020

2021

January

13-15

Shenzhen, China

2nd International Conference on Frontiers of Intelligent Manufacturing and Automation (CFIMA’21), 2021

2020

December

14-16

Bangkok, Thailand

International Conference on Cyber Physical Systems and IoT (CPSIOT’20), 2020

2020

December

14-16

Bangkok, Thailand

International Conference on Wireless Networks and Embedded Systems (ICWNES’20), 2020

2020

December

14-16

Bangkok, Thailand

International Joint Conference on Signals, Systems and Computers (CSSC’20), 2020

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high performance computing on graphics processing units: hgpu.org

Applications

Heterogeneous Parallelization and Acceleration of Molecular Dynamics Simulations in GROMACS

Evaluating the Energy Efficiency of OpenCL-accelerated AutoDock Molecular Docking

JAX, M.D.: End-to-End Differentiable, Hardware Accelerated, Molecular Dynamics in Pure Python

libmolgrid: GPU Accelerated Molecular Gridding for Deep Learning Applications

Code Optimization on GPUs

Using Compiler Directives for Performance Portability in Scientific Computing: Kernels from Molecular Simulation

A Case Study in Using OpenCL on FPGAs: Creating an Open-Source Accelerator of the AutoDock Molecular Docking Software

Chebyshev Filter Diagonalization on Modern Manycore Processors and GPGPUs

GAMER-2: a GPU-accelerated adaptive mesh refinement code — accuracy, performance, and scalability

Molecular dynamics recipes for genome research

Dynamic Parallelism in GPU Optimized Barnes Hut Trees for Molecular Dynamics Simulations

An efficient MPI/OpenMP parallelization of the Hartree-Fock method for the second generation of Intel Xeon Phi processor

Recent source codes

Ginkgo: a high-performance linear algebra library for manycore systems

GROMACS with CUDA-aware MPI direct GPU communication support

Rodinia_SYCL: The Rodinia Benchmark Suite in SYCL

Neural Architecture Search Without Training

OpenABLext: An extension to OpenABL, a framework to generate high- performance code for agent-based simulations

SOFF: SNU OpenCL Framework for FPGAs

GCOOSpDM: Sparse-dense matrix-matrix multiplication on GPUs

Programming Your GPU with OpenMP: A Hands-On Introduction

sycl-bench: SYCL Benchmark Suite

BlaBla: A Python package for clinical linguistic feature extraction in multiple languages

Most viewed papers (last 30 days)

Featured events

The Fifth International Workshop on GPU Computing and AI (GCA), 2020

2nd International Conference on Frontiers of Intelligent Manufacturing and Automation (CFIMA’21), 2021

International Conference on Cyber Physical Systems and IoT (CPSIOT’20), 2020

International Conference on Wireless Networks and Embedded Systems (ICWNES’20), 2020

International Joint Conference on Signals, Systems and Computers (CSSC’20), 2020