5089
Cristian Dittamo, Davide Cangelos
The simulation of chemical reacting systems is one of the most challenging topics in Systems Biology, due to their complexity and inherent randomness. The Gillespie’s Stochastic Simulation Algorithm (SSA) is a standard algorithm to simulate well-stirred biochemical systems, butthe computational burden makes this algorithm slow to compute for many realistic problems. Recent programmability improvements allow […]
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Filip Vesely
The performance and the level of programmability of graphics processors (GPU) on current video cards offer new capabilities beyond the graphics applications for which they were designed. These are general-purpose computations which expose parallelism. In this thesis, I describe the iterative methods for solving sparse linear systems: the Jacobi, Gauss-Seidel, Conjugate Gradient and BiConjugate Gradient […]
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