high performance computing on graphics processing units: hgpu.org

Tommaso Biagini, Giovanni Chillemi, Gianluigi Mazzoccoli, Alessandro Grottesi, Caterina Fusilli, Daniele Capocefalo, Stefano Castellana, Angelo Luigi Vescovi, Tommaso Mazza

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Tags: Benchmarking, Bioinformatics, Biology, Chemistry, CUDA, Genomics, Molecular dynamics, nVidia, OpenCL, Physics, Tesla C2070

December 19, 2017 by hgpu

HCudaBLAST: an implementation of BLAST on Hadoop and Cuda

Nilay Khare, Alind Khare and Farhan Khan

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Tags: Algorithms, Bioinformatics, Biology, BLAST, CUDA, Hadoop, nVidia, nVidia Quadro 2000, nVidia Quadro 600, Tesla C2075

December 3, 2017 by hgpu

A Hybrid-parallel Architecture for Applications in Bioinformatics

Jan Christian Kassens

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Tags: Algorithms, Bioinformatics, Biology, Computer science, CUDA, FPGA, nVidia, nVidia GeForce GTX 780 Ti, Thesis

December 3, 2017 by hgpu

High Performance Streaming Smith-Waterman Implementation with Implicit Synchronization on Intel FPGA using OpenCL

Ernst Joachim Houtgast, Vlad-Mihai Sima, Zaid Al-Ars

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Tags: Algorithms, Bioinformatics, Biology, FPGA, OpenCL, Smith-Waterman algorithm

November 26, 2017 by hgpu

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2020

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Shenzhen, China

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Bangkok, Thailand

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high performance computing on graphics processing units: hgpu.org

Evaluating the Energy Efficiency of OpenCL-accelerated AutoDock Molecular Docking

LOGAN: High-Performance GPU-Based X-Drop Long-Read Alignment

Parallel scalable simulations of biological neural networks using TensorFlow: A beginner’s guide

ASW: Accelerating Smith-Waterman Algorithm on Coupled CPU-GPU Architecture

SWIFOLD: Smith-Waterman implementation on FPGA with OpenCL for long DNA sequences

Interactive GPU active contours for segmenting inhomogeneous objects

Fast and Flexible GPU Accelerated Binding Free Energy Calculations within the AMBER Molecular Dynamics Package

pyPaSWAS: Python-based multi-core CPU and GPU sequence alignment

Molecular dynamics recipes for genome research

HCudaBLAST: an implementation of BLAST on Hadoop and Cuda

A Hybrid-parallel Architecture for Applications in Bioinformatics

High Performance Streaming Smith-Waterman Implementation with Implicit Synchronization on Intel FPGA using OpenCL

Recent source codes

sycl-bench: SYCL Benchmark Suite

Ginkgo: A Modern Linear Operator Algebra Framework for High Performance Computing

Ginkgo: a high-performance linear algebra library for manycore systems

GROMACS with CUDA-aware MPI direct GPU communication support

Rodinia_SYCL: The Rodinia Benchmark Suite in SYCL

Neural Architecture Search Without Training

OpenABLext: An extension to OpenABL, a framework to generate high- performance code for agent-based simulations

SOFF: SNU OpenCL Framework for FPGAs

GCOOSpDM: Sparse-dense matrix-matrix multiplication on GPUs

Programming Your GPU with OpenMP: A Hands-On Introduction

Most viewed papers (last 30 days)

Featured events

The Fifth International Workshop on GPU Computing and AI (GCA), 2020

2nd International Conference on Frontiers of Intelligent Manufacturing and Automation (CFIMA’21), 2021

International Conference on Cyber Physical Systems and IoT (CPSIOT’20), 2020

International Conference on Wireless Networks and Embedded Systems (ICWNES’20), 2020

International Joint Conference on Signals, Systems and Computers (CSSC’20), 2020