high performance computing on graphics processing units: hgpu.org

Applications

hgpu.org » Applications

MICA: A fast short-read aligner that takes full advantage of Intel Many Integrated Core Architecture (MIC)

Sze-Hang Chan, Jeanno Cheung, Edward Wu, Heng Wang, Chi-Man Liu, Xiaoqian Zhu, Shaoliang Peng, Ruibang Luo, Tak-Wah Lam

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Tags: Bioinformatics, Biology, Intel Xeon Phi, Package

February 21, 2014 by hgpu

Effects of Easy Hybrid Parallelization with CUDA for Numerical-Atomic-Orbital Density Functional Theory Calculation

Jae-Hyeon Parq, Erik Sevre, Sang-Mook Lee

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Tags: Computer science, CUDA, MPI, nVidia, nVidia Quadro 4000

February 21, 2014 by hgpu

X-ray CT on the GPU

Ravikiran Tadepalli

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Tags: Algorithms, CUDA, Medicine, nVidia, Tesla C1060, Thesis, Tomography

February 19, 2014 by hgpu

Large-Scale Geospatial Processing on Multi-Core and Many-Core Processors: Evaluations on CPUs, GPUs and MICs

Jianting Zhang, Simin You

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Tags: Algorithms, Computer science, CUDA, Intel Xeon Phi, nVidia, nVidia GeForce GTX Titan, nVidia Quadro 6000, Tesla C2050

February 19, 2014 by hgpu

Using of GPUs for cluster analysis of large data by K-means method

Natalya Litvinenko

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Tags: Algorithms, Cluster analysis, Computer science, CUDA, nVidia, nVidia GeForce GTX 660

February 19, 2014 by hgpu

Parallel algorithms for problems of cluster analysis with very large amount of data

Natalya Litvinenko

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Tags: Algorithms, Cluster analysis, Computer science, CUDA, Nearest neighbour, nVidia, nVidia GeForce GTX 660

February 19, 2014 by hgpu

Fast Hamiltonian Monte Carlo Using GPU Computing

Andrew L. Beam, Sujit K. Ghosh, Jon Doyle

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Tags: Algorithms, Bayesian, CUDA, CULA, Monte Carlo simulation, nVidia, Package, Python, Statistics, Tesla K20

February 19, 2014 by hgpu

Towards a Performance-Portable FFT Library for Heterogeneous Computing

Carlo del Mundo, Wu-chun Feng

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Tags: ATI, ATI Radeon HD 6970, ATI Radeon HD 7970, FFT, nVidia, OpenCL, Signal processing, Spectral methods, Tesla C2075, Tesla K20

February 17, 2014 by hgpu

A Similarity-Based Analysis Tool for Scientific Application Porting

Wei Ding

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Tags: Benchmarking, Computer science, CUDA, MPI, nVidia, OpenMP, Performance, Portability, Tesla C2070, Thesis

February 17, 2014 by hgpu

The battle of the giants: a case study of GPU vs FPGA optimisation for real-time image processing

Lars Struyf, Stijn De Beugher, Dong Hoon Van Uytsel, Frans Kanters, Toon Goedeme

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Tags: Algorithms, ATI, ATI Radeon HD 6870, Computer vision, FPGA, Image processing, OpenCL

February 17, 2014 by hgpu

Petascale elliptic solvers for anisotropic PDEs on GPU clusters

Eike Hermann Muller, Robert Scheichl, Benson Muite, Eero Vainikko

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Tags: Algorithms, Computer science, CUDA, GPU cluster, Numerical Analysis, nVidia, Partial differential equations, PDEs, Tesla K20, Tesla M2090

February 17, 2014 by hgpu

GPU Programming with CUDA: A brief overview

Filipo Novo Mor, Plauto de Abreu Neto

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Tags: Computer science, CUDA, nVidia, Overview

February 17, 2014 by hgpu

Over-synchronization in GPU Programs

profile_util: simple C++ library to report memory, timing, thread affinity

Profile Util library: A quick and easy way to get MPI, OpenMP and GPU runtime information

MaC: Mamba CPU performance predictor

MambaCPU: Enhanced Correlation Mining with State Space Models for CPU Performance Prediction

Mixed-precision finite element kernels

Mixed-precision finite element kernels and assembly: Rounding error analysis and hardware acceleration

SHMT: The Simultaneous and Heterogenous Multithreading project

General-Purpose Computing on Tensor Processors

Superpipeline: A Universal Approach for Reducing GPU Memory Usage in Large Models

EnergyUCB-Bandit

Online Energy Optimization in GPUs: A Multi-Armed Bandit Approach

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high performance computing on graphics processing units: hgpu.org

Applications

MICA: A fast short-read aligner that takes full advantage of Intel Many Integrated Core Architecture (MIC)

Effects of Easy Hybrid Parallelization with CUDA for Numerical-Atomic-Orbital Density Functional Theory Calculation

X-ray CT on the GPU

Large-Scale Geospatial Processing on Multi-Core and Many-Core Processors: Evaluations on CPUs, GPUs and MICs

Using of GPUs for cluster analysis of large data by K-means method

Parallel algorithms for problems of cluster analysis with very large amount of data

Fast Hamiltonian Monte Carlo Using GPU Computing

Towards a Performance-Portable FFT Library for Heterogeneous Computing

A Similarity-Based Analysis Tool for Scientific Application Porting

The battle of the giants: a case study of GPU vs FPGA optimisation for real-time image processing

Petascale elliptic solvers for anisotropic PDEs on GPU clusters

GPU Programming with CUDA: A brief overview

Recent source codes

Kokkidio: Kokkos+Eigen - write fast, readable multi-platform code

LLaMA-Inference-Bench

MATAR

Over-synchronization in GPU Programs

profile_util: simple C++ library to report memory, timing, thread affinity

MaC: Mamba CPU performance predictor

Mixed-precision finite element kernels

SHMT: The Simultaneous and Heterogenous Multithreading project

Superpipeline: A Universal Approach for Reducing GPU Memory Usage in Large Models

EnergyUCB-Bandit

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