Algorithms for the mapping of genome sequences in GPGPU

David Seide
Universitat Politecnica de Valencia. Escuela Tecnica Sup. de Ingenieria Informatica-Escola Tecnica Sup. d’Enginyeria Informatica
Universitat Politecnica de Valencia, 2012


   title={Algorithms for the mapping of genome sequences in GPGPU},

   author={Seide, D.},



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This project focuses on using GPGPUs for solving the inexact alignment of short-reads with respect to a reference indexed using the Burrows-Wheeler Transform. To be more specific we dealt with a solution of an alignment that allows up to one error.
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