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Posts

Jul, 26

Bit-level Parallelization of 3DES Encryption on GPU

Triple DES (3DES) is a standard fundamental encryption algorithm, used in several electronic payment applications and web browsers. In this paper, we propose a parallel implementation of 3DES on GPU. Since 3DES encrypts data with 64-bit blocks, our approach considers each 64-bit block a kernel block and assign a separate thread to process each bit. […]
Jul, 26

GPU coprocessors as a service for deep learning inference in high energy physics

In the next decade, the demands for computing in large scientific experiments are expected to grow tremendously. During the same time period, CPU performance increases will be limited. At the CERN Large Hadron Collider (LHC), these two issues will confront one another as the collider is upgraded for high luminosity running. Alternative processors such as […]
Jul, 26

UVMBench: A Comprehensive Benchmark Suite for Researching Unified Virtual Memory in GPUs

The recent introduction of Unified Virtual Memory (UVM) in GPUs offers a new programming model that allows GPUs and CPUs to share the same virtual memory space, shifts the complex memory management from programmers to GPU driver/ hardware, and enables kernel execution even when memory is oversubscribed. Meanwhile, UVM may also incur considerable performance overhead […]
Jul, 19

Offload Annotations: Bringing Heterogeneous Computing to Existing Libraries and Workloads

As specialized hardware accelerators such as GPUs become increasingly popular, developers are looking for ways to target these platforms with high-level APIs. One promising approach is kernel libraries such as PyTorch or cuML, which provide interfaces that mirror CPU-only counterparts such as NumPy or Scikit-Learn. Unfortunately, these libraries are hard to develop and to adopt […]
Jul, 19

Compyle: a Python package for parallel computing

Compyle allows users to execute a restricted subset of Python on a variety of HPC platforms. It is an embedded domain-specific language (eDSL) for parallel computing. It currently supports multi-core execution using Cython, and OpenCL and CUDA for GPU devices. Users write code in a restricted subset of Python that is automatically transpiled to high-performance […]
Jul, 19

Accelerating Deep Learning Inference with Cross-Layer Data Reuse on GPUs

Accelerating the deep learning inference is very important for real-time applications. In this paper, we propose a novel method to fuse the layers of convolutional neural networks (CNNs) on Graphics Processing Units (GPUs), which applies data reuse analysis and access optimization in different levels of the memory hierarchy. To achieve the balance between computation and […]
Jul, 19

A load balance multi-scheduling model for OpenCL kernel tasks in an integrated cluster

Nowadays, embedded systems are comprised of heterogeneous multi-core architectures, i.e., CPUs and GPUs. If the application is mapped to an appropriate processing core, then these architectures provide many performance benefits to applications. Typically, programmers map sequential applications to CPU and parallel applications to GPU. The task mapping becomes challenging because of the usage of evolving […]
Jul, 19

Deep Graph Library Optimizations for Intel(R) x86 Architecture

The Deep Graph Library (DGL) was designed as a tool to enable structure learning from graphs, by supporting a core abstraction for graphs, including the popular Graph Neural Networks (GNN). DGL contains implementations of all core graph operations for both the CPU and GPU. In this paper, we focus specifically on CPU implementations and present […]
Jul, 12

GPU-Accelerated Drug Discovery with Docking on the Summit Supercomputer: Porting, Optimization, and Application to COVID-19 Research

Protein-ligand docking is an in silico tool used to screen potential drug compounds for their ability to bind to a given protein receptor within a drug-discovery campaign. Experimental drug screening is expensive and time consuming, and it is desirable to carry out large scale docking calculations in a high-throughput manner to narrow the experimental search […]
Jul, 12

Investigating Input Representations and Representation Models of Source Code for Machine Learning

Machine Learning methods are actively used to solve various tasks on source code, such as in Compilers to improve performance of executable code, or IDEs to boost developer productivity. While the use cases are manifold, most of these methods rely on manually-defined features that require substantial engineering efforts, while not necessarily being optimal. In this […]
Jul, 12

Bayesian inference for artificial perception using OpenCL on FPGAs and GPUs

This dissertation project addresses the implementation of Bayesian inference on FPGAs and GPUs, following a top-down approach and using OpenCL. The target application of this Bayesian inference algorithms is artificial perception in robotics. The aim is to improve the power efficiency of Bayesian inference computations. Previous work at our university in the scope of an […]
Jul, 12

Automated Partitioning of Data-Parallel Kernels using Polyhedral Compilation

GPUs are well-established in domains outside of computer graphics, including scientific computing, artificial intelligence, data warehousing, and other computationally intensive areas. Their execution model is based on a thread hierarchy and suggests that GPU workloads can generally be safely partitioned along the boundaries of thread blocks. However, the most efficient partitioning strategy is highly dependent […]

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