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ClawHMMER: A Streaming HMMer-Search Implementation

Daniel R. Horn, Mike Houston, Pat Hanrahan

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Tags: ATI, ATI Radeon X800, Bioinformatics, Biology, Brook, nVidia, nVidia GeForce 6800 Ultra, nVidia GeForce 7800 GTX, Pattern Search

November 30, 2010 by hgpu

Nonlinear optimization with a massively parallel Evolution Strategy-Pattern Search algorithm on graphics hardware

Weihang Zhu

Tags: Computer science, Evolutionary Computations, Pattern Search

November 9, 2010 by hgpu

Massively parallel differential evolution-pattern search optimization with graphics hardware acceleration: an investigation on bound constrained optimization problems

Weihang Zhu

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Tags: Computer science, CUDA, Differential evolution, Finance, nVidia, nVidia GeForce GTX 280, Pattern Search

November 9, 2010 by hgpu

CLUEstering: a high-performance density-based clustering library for scientific computing

CLUEstering: a high-performance density-based clustering library for scientific computing

PyOMP: OpenMP for Python in Numba

PyOMP: Parallel programming for CPUs and GPUs with OpenMP and Python

HiRep

Scaling SU(2) to 1000 GPUs using HiRep

GPPerf: Energy-Aware GPU Performance Prediction and Optimization Framework

Understanding GEMM Performance and Energy on NVIDIA Ada Lovelace: A Machine Learning-Based Analytical Approach

gpuPairHMM: Ultra-fast GPU-based PairHMM for DNA Variant Calling

gpuPairHMM: High-speed Pair-HMM Forward Algorithm for DNA Variant Calling on GPUs

Gaia AVU-GSR

Performance portability via C++ PSTL, SYCL, OpenMP, and HIP: the Gaia AVU-GSR case study

Kokkidio: Kokkos+Eigen - write fast, readable multi-platform code

Kokkidio: Fast, expressive, portable code, based on Kokkos and Eigen

LLaMA-Inference-Bench

LLM-Inference-Bench: Inference Benchmarking of Large Language Models on AI Accelerators

MATAR

On a Simplified Approach to Achieve Parallel Performance and Portability Across CPU and GPU Architectures

Over-synchronization in GPU Programs

Over-synchronization in GPU Programs

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