high performance computing on graphics processing units: hgpu.org

Roberto Ammendola, Andrea Biagioni, Ottorino Frezza, Francesca Lo Cicero, Alessandro Lonardo, Pier Stanislao Paolucci, Davide Rossetti, Andrea Salamon, Gaetano Salina, Francesco Simula, Laura Tosoratto, Piero Vicini

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Tags: Computational Physics, Distributed computing, High Energy Physics - Lattice, Monte Carlo simulation, nVidia, OpenMPI, Physics, QCD, Tesla C1060, Tesla M2050

February 21, 2011 by hgpu

MuMax: a new high-performance micromagnetic simulation tool

Arne Vansteenkiste, Ben Van de Wiele

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Tags: Computational Physics, CUDA, Materials Science, Mesoscale and Nanoscale Physics, nVidia, nVidia GeForce GTX 580, Package, Physics

February 16, 2011 by hgpu

Biomolecular electrostatics using a fast multipole BEM on up to 512 GPUs and a billion unknowns

Rio Yokota, Jaydeep P. Bardhan, Matthew G. Knepley, L. A. Barba, Tsuyoshi Hamada

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Tags: Chemical Physics, Computational Physics, Computer science, CUDA, Electrostatics, Fast multipole method, Integral equations, nVidia, nVidia GeForce GTX 295, Package

February 14, 2011 by hgpu

CLUEstering: a high-performance density-based clustering library for scientific computing

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high performance computing on graphics processing units: hgpu.org

GPU accelerated simulations of 3D deterministic particle transport using discrete ordinates method

Fine-sorting One-dimensional Particle-In-Cell Algorithm with Monte-Carlo Collisions on a Graphics Processing Unit

A pseudospectral matrix method for time-dependent tensor fields on a spherical shell

OpenCL/OpenGL aproach for studying active Brownian motion

Data Assimilation using a GPU Accelerated Path Integral Monte Carlo Approach

Classical Simulation of Quantum Adiabatic Algorithms using Mathematica on GPUs

General-purpose molecular dynamics simulations on GPU-based clusters

HORIZON: Accelerated General Relativistic Magnetohydrodynamics

SU(2) Lattice Gauge Theory Simulations on Fermi GPUs

APEnet+: high bandwidth 3D torus direct network for petaflops scale commodity clusters

MuMax: a new high-performance micromagnetic simulation tool

Biomolecular electrostatics using a fast multipole BEM on up to 512 GPUs and a billion unknowns

Recent source codes

CLUEstering: a high-performance density-based clustering library for scientific computing

PyOMP: OpenMP for Python in Numba

HiRep

GPPerf: Energy-Aware GPU Performance Prediction and Optimization Framework

gpuPairHMM: Ultra-fast GPU-based PairHMM for DNA Variant Calling

Gaia AVU-GSR

Kokkidio: Kokkos+Eigen - write fast, readable multi-platform code

LLaMA-Inference-Bench

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