Aug, 17

GARDENIA: A Domain-specific Benchmark Suite for Next-generation Accelerators

This paper presents the Graph Analytics Repository for Designing Next-generation Accelerators (GARDENIA), a benchmark suite for studying irregular algorithms on massively parallel accelerators. Existing generic benchmarks for accelerators have mainly focused on high performance computing (HPC) applications with limited control and data irregularity, while available graph analytics benchmarks do not apply state-of-the-art algorithms and/or optimization […]
Aug, 14

Accelerating digital forensic searching through GPGPU parallel processing techniques

Background String searching within a large corpus of data is a critical component of digital forensic (DF) analysis techniques such as file carving. The continuing increase in capacity of consumer storage devices requires similar improvements to the performance of string searching techniques employed by DF tools used to analyse forensic data. As string searching is […]
Aug, 8

Using Graph Properties to Speed-up GPU-based Graph Traversal: A Model-driven Approach

While it is well-known and acknowledged that the performance of graph algorithms is heavily dependent on the input data, there has been surprisingly little research to quantify and predict the impact the graph structure has on performance. Parallel graph algorithms, running on many-core systems such as GPUs, are no exception: most research has focused on […]
Aug, 8

GPU Array Access Auto-Tuning

GPUs have been used for years in compute intensive applications. Their massive parallel processing capabilities can speedup calculations significantly. However, to leverage this speedup it is necessary to rethink and develop new algorithms that allow parallel processing. These algorithms are only one piece to achieve high performance. Nearly as important as suitable algorithms is the […]
Aug, 8

An efficient MPI/OpenMP parallelization of the Hartree-Fock method for the second generation of Intel Xeon Phi processor

Modern OpenMP threading techniques are used to convert the MPI-only Hartree-Fock code in the GAMESS program to a hybrid MPI/OpenMP algorithm. Two separate implementations that differ by the sharing or replication of key data structures among threads are considered, density and Fock matrices. All implementations are benchmarked on a super-computer of 3,000 Intel Xeon Phi […]
Aug, 8

Practically efficient methods for performing bit-reversed permutation in C++11 on the x86-64 architecture

The bit-reversed permutation is a famous task in signal processing and is key to efficient implementation of the fast Fourier transform. This paper presents optimized C++11 implementations of five extant methods for computing the bit-reversed permutation: Stockham auto-sort, naive bitwise swapping, swapping via a table of reversed bytes, local pairwise swapping of bits, and swapping […]
Aug, 8

Bifrost: a Python/C++ Framework for High-Throughput Stream Processing in Astronomy

Radio astronomy observatories with high throughput back end instruments require real-time data processing. While computing hardware continues to advance rapidly, development of real-time processing pipelines remains difficult and time-consuming, which can limit scientific productivity. Motivated by this, we have developed Bifrost: an open-source software framework for rapid pipeline development. Bifrost combines a high-level Python interface […]
Aug, 1

AutOMP: An Automatic OpenMP Parallelization Generator for Variable-Oriented High-Performance Scientific Codes

OpenMP is a cross-platform API that extends C, C++ and Fortran and provides shared-memory parallelism platform for those languages. The use of many cores and HPC technologies for scientific computing has been spread since the 1990s, and now takes part in many fields of research. The relative ease of implementing OpenMP, along with the development […]
Aug, 1

Optimized Broadcast for Deep Learning Workloads on Dense-GPU InfiniBand Clusters: MPI or NCCL?

Dense Multi-GPU systems have recently gained a lot of attention in the HPC arena. Traditionally, MPI runtimes have been primarily designed for clusters with a large number of nodes. However, with the advent of MPI+CUDA applications and CUDA-Aware MPI runtimes like MVAPICH2 and OpenMPI, it has become important to address efficient communication schemes for such […]
Aug, 1

Deep Architectures for Neural Machine Translation

It has been shown that increasing model depth improves the quality of neural machine translation. However, different architectural variants to increase model depth have been proposed, and so far, there has been no thorough comparative study. In this work, we describe and evaluate several existing approaches to introduce depth in neural machine translation. Additionally, we […]
Aug, 1

A GPU Based Memory Optimized Parallel Method For FFT Implementation

FFT (fast Fourier transform) plays a very important role in many fields, such as digital signal processing, digital image processing and so on. However, in application, FFT becomes a factor of affecting the processing efficiency, especially in remote sensing, which large amounts of data need to be processed with FFT. So shortening the FFT computation […]
Aug, 1

Directive-Based Partitioning and Pipelining for Graphical Processing Units

The community needs simpler mechanisms to access the performance available in accelerators, such as GPUs, FPGAs, and APUs, due to their increasing use in stateof-the-art supercomputers. Programming models like CUDA, OpenMP, OpenACC and OpenCL can efficiently offload compute-intensive workloads to these devices. By default these models naively offload computation without overlapping it with communication (copying […]
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