high performance computing on graphics processing units: hgpu.org

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Langevin dynamics simulations of biomolecules on graphics processors

A. Zhmurov, R. I. Dima, Y. Kholodov, V. Barsegov

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Tags: Biological Physics, Biomolecules, Condensed matter, CUDA, Molecular dynamics, nVidia, nVidia GeForce GTX 295, Physics, Soft Condensed Matter

November 12, 2010 by hgpu

CUDA simulations of active dumbbell suspensions

Victor Putz, Jorn Dunkel, Julia M. Yeomans

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Tags: Condensed matter, CUDA, nVidia, nVidia GeForce GTX 295, Physics, Soft Condensed Matter, Tesla C1060

November 11, 2010 by hgpu

Toward large-scale Hybrid Monte Carlo simulations of the Hubbard model on graphics processing units

Kyle A. Wendt, Joaquin E. Drut, Timo A. Lahde

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Tags: Computational Physics, Condensed matter, CUDA, Monte Carlo simulation, nVidia, Physics, Statistical Mechanics, Tesla C1060

November 11, 2010 by hgpu

General purpose Molecular Dynamics Simulations on GPUs: Issues of Pair Forces and Scaling to large Clusters

Christian Trott, Lars Winterfeld

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Tags: Computational Physics, Condensed matter, CUDA, GPU cluster, Materials Science, Molecular dynamics, MPI, nVidia, nVidia GeForce GTX 280, nVidia GeForce GTX 295, Package, Performance, Physics, Tesla C1060, Tesla S1070

November 9, 2010 by hgpu

A framework for simulating and estimating the state and functional topology of complex dynamic geometric networks

Marius Buibas, Gabriel A. Silva

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Tags: Biological Physics, Condensed matter, CUDA, Disordered Systems and Neural Networks, Mathematical Physics, Neurons and Cognition, nVidia, Package, Physics, Tesla C1060

November 9, 2010 by hgpu

Harvesting graphics power for MD simulations

J. A. van Meel, A. Arnold, D. Frenkel, Portegies S. F. Zwart, R. G. Belleman

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Tags: Condensed matter, CUDA, Molecular dynamics, nVidia, nVidia GeForce 8800 GTX, Soft Condensed Matter

November 3, 2010 by hgpu

The Heisenberg spin glass model on GPU: myths and actual facts

M. Bernaschi, G. Parisi, L. Parisi

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Tags: Condensed matter, CUDA, Disordered Systems and Neural Networks, nVidia, nVidia GeForce GTX 480, Package, Physics, Spin Systems, Tesla C1060, Tesla C2050

October 28, 2010 by hgpu

gpu_tracker: Context manager and CLI that tracks the computational-resource-usage of a code block or shell command, particularly the GPU usage

gpu_tracker: Python package for tracking and profiling GPU utilization in both desktop and high-performance computing environments

LOOPer: a polyhedral compiler for expressing fast and portable data parallel algorithms

LOOPer: A Learned Automatic Code Optimizer For Polyhedral Compilers

OpenMC Monte Carlo Code

Performance Portable Monte Carlo Particle Transport on Intel, NVIDIA, and AMD GPUs

Polygeist: C/C++ frontend for MLIR

Retargeting and Respecializing GPU Workloads for Performance Portability

Parallel Gaussian process with kernel approximation in CUDA

Optical flow algorithms for SYCL

SYCL in the edge: performance and energy evaluation for heterogeneous acceleration

OpenMP5-Offload-OpenMC-Intel-PVC

Distributed OpenMP Offloading of OpenMC on Intel GPU MAX Accelerators

See all packages

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high performance computing on graphics processing units: hgpu.org

Langevin dynamics simulations of biomolecules on graphics processors

CUDA simulations of active dumbbell suspensions

Toward large-scale Hybrid Monte Carlo simulations of the Hubbard model on graphics processing units

General purpose Molecular Dynamics Simulations on GPUs: Issues of Pair Forces and Scaling to large Clusters

A framework for simulating and estimating the state and functional topology of complex dynamic geometric networks

Harvesting graphics power for MD simulations

The Heisenberg spin glass model on GPU: myths and actual facts

Recent source codes

QArray

Celerity: High-level C++ for Accelerator Clusters

CIFAR-10 Airbench: 94% on CIFAR-10 in 3.29 second

gpu_tracker: Context manager and CLI that tracks the computational-resource-usage of a code block or shell command, particularly the GPU usage

LOOPer: a polyhedral compiler for expressing fast and portable data parallel algorithms

OpenMC Monte Carlo Code

Polygeist: C/C++ frontend for MLIR

Parallel Gaussian process with kernel approximation in CUDA

Optical flow algorithms for SYCL

OpenMP5-Offload-OpenMC-Intel-PVC

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