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Fast k Nearest Neighbor Search using GPU

Vincent Garcia, Eric Debreuve, Michel Barlaud

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Tags: Computer science, Computer vision, CUDA, nVidia, nVidia GeForce 8800 GTX

October 27, 2010 by hgpu

Sequence alignment with GPU: Performance and design challenges

Gregory M. Striemer, Ali Akoglu

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Tags: Bioinformatics, Biology, Computational biology, Computer science, CUDA, nVidia, Package, Sequence alignment, Smith-Waterman algorithm, Tesla C870

October 27, 2010 by hgpu

An improved study of real-time fluid simulation on GPU

Enhua Wu, Youquan Liu, Xuehui Liu

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Tags: Fluid dynamics, Navier-Stokes equations, NSEs, nVidia, nVidia GeForce FX 5950 Ultra

October 27, 2010 by hgpu

GPU-Quicksort: A practical Quicksort algorithm for graphics processors

Daniel Cederman, Philippas Tsigas

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Tags: Algorithms, Computer science, CUDA, Data Structures and Algorithms, nVidia, nVidia GeForce 8600 GTS, nVidia GeForce 8800 GTX, Package, Sorting

October 27, 2010 by hgpu

GPU accelerated pathfinding

Avi Bleiweiss

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Tags: Artificial intelligence, Computer science, CUDA, nVidia, nVidia GeForce 8800 GT, nVidia GeForce GTX 280, Presentation, Search strategies

October 27, 2010 by hgpu

Mass-spring systems on the GPU

Joachim Georgii, Rudiger Westermann

Tags: Computer science, Mass-spring systems, Physics-based simulation, Rendering

October 27, 2010 by hgpu

Fast parallel GPU-sorting using a hybrid algorithm

E. Sintorn, U. Assarsson

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Tags: Computer science, Data Structures and Algorithms, nVidia, nVidia GeForce 8800 GTX, Sorting

October 27, 2010 by hgpu

GPU-based spatial interaction force simulation

Chris Truszkowski, Benjamin Bishop

Tags: Computer science

October 27, 2010 by hgpu

Techniques for efficient DCT/IDCT implementation on generic GPU

Bo Fang, Guobin Shen, Shipeng Li, Huifang Chen

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Tags: ATI, ATI Radeon 9700 Pro, Computer science, HLSL, Image processing

October 27, 2010 by hgpu

GPU acceleration of a production molecular docking code

Bharat Sukhwani, Martin C. Herbordt

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Tags: Bioinformatics, Biophysics, Chemistry, FPGA, Molecular dynamics, nVidia, Tesla C1060

October 27, 2010 by hgpu

GPU accelerated molecular dynamics simulation of thermal conductivities

Juekuan Yang, Yujuan Wang, Yunfei Chen

Tags: Computational Physics, Molecular dynamics, nVidia, Physics

October 27, 2010 by hgpu

ACEMD: Accelerating Biomolecular Dynamics in the Microsecond Time Scale

M. J. Harvey, G. Giupponi, G. De Fabritiis

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Tags: Biological Physics, Chemistry, Computational Physics, CUDA, GPU cluster, Molecular dynamics, nVidia, nVidia GeForce GTX 280, Package, Physics, Tesla C1060

October 27, 2010 by hgpu

SimSYCL: Synchronous, single-threaded, library-only SYCL implementation for debugging and verification

SimSYCL: A SYCL Implementation Targeting Development, Debugging, Simulation and Conformance

gpu_tracker: Context manager and CLI that tracks the computational-resource-usage of a code block or shell command, particularly the GPU usage

gpu_tracker: Python package for tracking and profiling GPU utilization in both desktop and high-performance computing environments

CIFAR-10 Airbench: 94% on CIFAR-10 in 3.29 second

94% on CIFAR-10 in 3.29 Seconds on a Single GPU

LOOPer: a polyhedral compiler for expressing fast and portable data parallel algorithms

LOOPer: A Learned Automatic Code Optimizer For Polyhedral Compilers

OpenMC Monte Carlo Code

Performance Portable Monte Carlo Particle Transport on Intel, NVIDIA, and AMD GPUs

Polygeist: C/C++ frontend for MLIR

Retargeting and Respecializing GPU Workloads for Performance Portability

Parallel Gaussian process with kernel approximation in CUDA

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high performance computing on graphics processing units: hgpu.org

Applications

Fast k Nearest Neighbor Search using GPU

Sequence alignment with GPU: Performance and design challenges

An improved study of real-time fluid simulation on GPU

GPU-Quicksort: A practical Quicksort algorithm for graphics processors

GPU accelerated pathfinding

Mass-spring systems on the GPU

Fast parallel GPU-sorting using a hybrid algorithm

GPU-based spatial interaction force simulation

Techniques for efficient DCT/IDCT implementation on generic GPU

GPU acceleration of a production molecular docking code

GPU accelerated molecular dynamics simulation of thermal conductivities

ACEMD: Accelerating Biomolecular Dynamics in the Microsecond Time Scale

Recent source codes

SimSYCL: Synchronous, single-threaded, library-only SYCL implementation for debugging and verification

GPU plugin for PySCF

QArray

Celerity: High-level C++ for Accelerator Clusters

gpu_tracker: Context manager and CLI that tracks the computational-resource-usage of a code block or shell command, particularly the GPU usage

CIFAR-10 Airbench: 94% on CIFAR-10 in 3.29 second

LOOPer: a polyhedral compiler for expressing fast and portable data parallel algorithms

OpenMC Monte Carlo Code

Polygeist: C/C++ frontend for MLIR

Parallel Gaussian process with kernel approximation in CUDA

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