high performance computing on graphics processing units: hgpu.org

hgpu.org » paper

MDLab: A molecular dynamics simulation prototyping environment

Trevor Cickovski, Santanu Chatterjee, Jacob Wenger, Christopher R. Sweet, Jesus A. Izaguirre

View

Download (PDF)

Source codes

Tags: Chemistry, Computational chemistry, CUDA, Molecular dynamics, nVidia, Package, Python

November 6, 2010 by hgpu

CUDASW++ 2.0: enhanced Smith-Waterman protein database search on CUDA-enabled GPUs based on SIMT and virtualized SIMD abstractions

Yongchao Liu, Bertil Schmidt, Douglas Maskell

View

Download (PDF)

Source codes

Tags: Bioinformatics, Biology, Computational biology, CUDA, nVidia, nVidia GeForce GTX 280, nVidia GeForce GTX 295, Package, Smith-Waterman algorithm

November 6, 2010 by hgpu

Parallel GPU-based data-dependent triangulations

Michal Cervenansky, Zsolt Toth, Juraj Starinsky, Andrej Ferko, Milos Sramek

Tags: Image processing, Image reconstruction

November 6, 2010 by hgpu

Automatic fitting of spiking neuron models to electrophysiological recordings

Cyrille Rossant, Dan F. Goodman, Jonathan Platkiewicz, Romain Brette

View

Download (PDF)

Source codes

Tags: Adaptive threshold, Biology, CUDA, Distributed computing, Neuroscience, nVidia, nVidia GeForce GTX 295, Optimization, Package

November 6, 2010 by hgpu

High-Throughput All-Atom Molecular Dynamics Simulations Using Distributed Computing

I. Buch, M. J. Harvey, T. Giorgino, D. P. Anderson, G. De Fabritiis

Tags: Biochemistry, Chemistry, Molecular dynamics, Thermodynamics

November 6, 2010 by hgpu

A GPU implementation for LBG and SOM training

Yi Xiao, Chi Leung, Tze-Yui Ho, Ping-Man Lam

Tags: Computer science, Neural Computing, Self-organizing map, Vector quantization

November 6, 2010 by hgpu

A matrix approach to tomographic reconstruction and its implementation on GPUs

F. Vazquez, E. M. Garzon, J. J. Fernandez

View

Download (PDF)

Tags: Biology, Image processing, Sparse matrix

November 6, 2010 by hgpu

Exploring the multiple-GPU design space

Dana Schaa, David Kaeli

View

Download (PDF)

Tags: Computer science, CUDA, GPU cluster, nVidia, nVidia GeForce 8800 GTX

November 6, 2010 by hgpu

GPU Computing for Atmospheric Modeling

Rory Kelly

Tags: CUDA, Earth and Space Sciences, nVidia

November 6, 2010 by hgpu

A Practical Quicksort Algorithm for Graphics Processors

Daniel Cederman, Philippas Tsigas

View

Download (PDF)

Tags: Algorithms, Computer science, CUDA, nVidia, nVidia GeForce 8600 GTS, nVidia GeForce 8800 GTX, Sorting

November 6, 2010 by hgpu

StoreGPU: exploiting graphics processing units to accelerate distributed storage systems

Samer Al-Kiswany, Abdullah Gharaibeh, Elizeu Santos-Neto, George Yuan, Matei Ripeanu

View

Download (PDF)

Source codes

Tags: Computer science, CUDA, Hashing, nVidia, nVidia GeForce 8600 GTS, nVidia GeForce 9800 GTX, Package, Storage system

November 6, 2010 by hgpu

HPCTransCompile: An AI Compiler Generated Dataset for High-Performance CUDA Transpilation and LLM Preliminary Exploration

Efficient Graph Embedding at Scale: Optimizing CPU-GPU-SSD Integration

Can Large Language Models Predict Parallel Code Performance?

See all packages

* * *

high performance computing on graphics processing units: hgpu.org

Applications

MDLab: A molecular dynamics simulation prototyping environment

CUDASW++ 2.0: enhanced Smith-Waterman protein database search on CUDA-enabled GPUs based on SIMT and virtualized SIMD abstractions

Parallel GPU-based data-dependent triangulations

Automatic fitting of spiking neuron models to electrophysiological recordings

High-Throughput All-Atom Molecular Dynamics Simulations Using Distributed Computing

A GPU implementation for LBG and SOM training

A matrix approach to tomographic reconstruction and its implementation on GPUs

Exploring the multiple-GPU design space

GPU Computing for Atmospheric Modeling

A Practical Quicksort Algorithm for Graphics Processors

StoreGPU: exploiting graphics processing units to accelerate distributed storage systems

Recent source codes

HPCTransCompile: An AI Compiler Generated Dataset for High-Performance CUDA Transpilation and LLM Preliminary Exploration

chemtrain: Training Molecular Dynamics Potentials in JAX

microSYCL: SYCL micro-benchmarks repository

XaaS containers

SYCL Container

CASS: Cuda-Amd aSSembly

Cluser of smartphones for edge computing application using TensorFlow

CFAL-bench

Efficient Graph Embedding at Scale: Optimizing CPU-GPU-SSD Integration

Can Large Language Models Predict Parallel Code Performance?

Most viewed papers (last 30 days)