high performance computing on graphics processing units: hgpu.org

Federico Simmross-Wattenberg, Manuel Rodriguez-Cayetano, Javier Royuela-del-Val, Elena Martin-Gonzalez, Elisa Moya-Saez, Marcos Martin-Fernandez, Carlos Alberola-Lopez

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Tags: Heterogeneous systems, Image processing, Medicine, OpenCL, Package

August 5, 2018 by hgpu

Interactive GPU active contours for segmenting inhomogeneous objects

Chris G. Willcocks, Philip T. G. Jackson, Carl J. Nelson, Amar V. Nasrulloh, Boguslaw Obara

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Tags: Biology, Image processing, Medicine, nVidia, nVidia GeForce GTX Titan X, OpenCL, Package

February 9, 2018 by hgpu

Simulating the Cardinal Movements of Childbirth Using Finite Element Analysis on the Graphics Processing Unit

Zelimkhan Gerikhanov

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Tags: AMD Radeon HD 8970 M, ATI, Biology, Biomechanics, FEM, Finite element method, Medicine, MRI, OpenCL, Thesis

August 17, 2017 by hgpu

DeepMetabolism: A Deep Learning System to Predict Phenotype from Genome Sequencing

Weihua Guo, You Xu, Xueyang Feng

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Tags: Biology, Computer science, Deep learning, Medicine, nVidia, nVidia GeForce GTX 1080, Package, Python, TensorFlow

May 11, 2017 by hgpu

BioEM: GPU-accelerated computing of Bayesian inference of electron microscopy images

Pilar Cossio, David Rohr, Fabio Baruffa, Markus Rampp, Volker Lindenstruth, Gerhard Hummer

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Tags: Bayesian, Biology, Biomolecules, CUDA, Electron microscopy, Heterogeneous systems, Medicine, Microscopy, MPI, nVidia, nVidia GeForce GTX Titan, OpenMP, Package, Tesla K20, Tomography

October 8, 2016 by hgpu

Over-synchronization in GPU Programs

profile_util: simple C++ library to report memory, timing, thread affinity

Profile Util library: A quick and easy way to get MPI, OpenMP and GPU runtime information

MaC: Mamba CPU performance predictor

MambaCPU: Enhanced Correlation Mining with State Space Models for CPU Performance Prediction

Mixed-precision finite element kernels

Mixed-precision finite element kernels and assembly: Rounding error analysis and hardware acceleration

SHMT: The Simultaneous and Heterogenous Multithreading project

General-Purpose Computing on Tensor Processors

Superpipeline: A Universal Approach for Reducing GPU Memory Usage in Large Models

EnergyUCB-Bandit

Online Energy Optimization in GPUs: A Multi-Armed Bandit Approach

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high performance computing on graphics processing units: hgpu.org

Frameworks in Medical Image Analysis with Deep Neural Networks

OpenCL FPGA Optimization guided by memory accesses and roofline model analysis applied to tomography acceleration

Hardware and Software Optimizations for Accelerating Deep Neural Networks: Survey of Current Trends, Challenges, and the Road Ahead

Biomedical and Clinical English Model Packages in the Stanza Python NLP Library

BlaBla: Linguistic Feature Extraction for Clinical Analysis in Multiple Languages

Using the Tsetlin Machine to Learn Human-Interpretable Rules for High-Accuracy Text Categorization with Medical Applications

Doctor AI: Interpretable Deep Learning for Modeling Electronic Health Records

OpenCLIPER: an OpenCL-based C++ Framework for Overhead-Reduced Medical Image Processing and Reconstruction on Heterogeneous Devices

Interactive GPU active contours for segmenting inhomogeneous objects

Simulating the Cardinal Movements of Childbirth Using Finite Element Analysis on the Graphics Processing Unit

DeepMetabolism: A Deep Learning System to Predict Phenotype from Genome Sequencing

BioEM: GPU-accelerated computing of Bayesian inference of electron microscopy images

Recent source codes

Kokkidio: Kokkos+Eigen - write fast, readable multi-platform code

LLaMA-Inference-Bench

MATAR

Over-synchronization in GPU Programs

profile_util: simple C++ library to report memory, timing, thread affinity

MaC: Mamba CPU performance predictor

Mixed-precision finite element kernels

SHMT: The Simultaneous and Heterogenous Multithreading project

Superpipeline: A Universal Approach for Reducing GPU Memory Usage in Large Models

EnergyUCB-Bandit

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