high performance computing on graphics processing units: hgpu.org

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A New Parallel Method of Smith-Waterman Algorithm on a Heterogeneous Platform

Bo Chen, Yun Xu, Jiaoyun Yang, Haitao Jiang

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Tags: Biology, CUDA, nVidia, nVidia GeForce 9800 GT, Sequence alignment, Smith-Waterman algorithm

December 17, 2010 by hgpu

Monte Carlo simulation of photon migration in 3D turbid media accelerated by graphics processing units

Qianqian Fang, David A. Boas

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Tags: CUDA, Monte Carlo simulation, nVidia, nVidia GeForce 8800 GT, Optics, Package, Physics

December 17, 2010 by hgpu

GPU Accelerated RNA Folding Algorithm

Guillaume Rizk, Dominique Lavenier

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Tags: Algorithms, Bioinformatics, Biology, CUDA, nVidia, nVidia GeForce GTX 280, Tesla C870

December 17, 2010 by hgpu

GPU Parallelization of Algebraic Dynamic Programming

Peter Steffen, Robert Giegerich, Mathieu Giraud

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Tags: Computer science, CUDA, nVidia, nVidia GeForce GTX 280, Package, Presentation, Programming techniques

December 17, 2010 by hgpu

GPU-accelerated differential evolutionary Markov Chain Monte Carlo method for multi-objective optimization over continuous space

Weihang Zhu, Yaohang Li

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Tags: Mathematics, nVidia, nVidia GeForce GTX 280, Optimization

December 17, 2010 by hgpu

GPU-based Monte Carlo simulation for light propagation in complex heterogeneous tissues

Nunu Ren, Jimin Liang, Xiaochao Qu, Jianfeng Li, Bingjia Lu, Jie Tian

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Tags: CUDA, Monte Carlo simulation, nVidia, nVidia GeForce GTX 260, Optics, Package, Physics

December 17, 2010 by hgpu

Accelerating Correlated Quantum Chemistry Calculations Using Graphical Processing Units

Mark Watson, Roberto Olivares-Amaya, Richard G. Edgar, Alan Aspuru-Guzik

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Tags: Chemistry, Computational chemistry, Molecular modeling, nVidia, Tesla C1060

December 17, 2010 by hgpu

Programming massively parallel processors : A Hands – on approach

David B Kirk and Wen-Mei W. Hwu

Tags: Algorithms, Book, Computer science, CUDA, nVidia, OpenCL, Review

December 17, 2010 by hgpu

A GPU solvent-solvent interaction calculation accelerator for biomolecular simulations using the GROMOS software

Nathan Schmid, Mathias Botschi, Wilfred F. Van Gunsteren

Tags: Chemistry, Computational chemistry, CUDA, Molecular dynamics, nVidia, nVidia Quadro FX 5800, Solvent effects

December 17, 2010 by hgpu

Molecular Dynamics on a Grand Scale

Matthew James Mawson Breeze

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Tags: ATI, ATI Radeon X1600, Chemistry, GLSL, Molecular dynamics, nVidia, nVidia GeForce 6200, nVidia GeForce 8800 GTS, OpenGL, Thesis

December 17, 2010 by hgpu

The Accelerated Universe

Adrian Pope, Salman Habib, Zarija Lukic, David Daniel, Patricia Fasel, Nehal Desai, and Katrin Heitmann

Tags: Astrophysics, Physics

December 17, 2010 by hgpu

Accelerating Monte Carlo simulations with an NVIDIA graphics processor

Paul Martinsen, Johannes Blaschke, Rainer Kunnemeyer and Robert Jordan

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Tags: CUDA, Monte Carlo simulation, nVidia, nVidia GeForce 8800 GT, Physics

December 16, 2010 by hgpu

CL4SE: A Context Learning Benchmark For Software Engineering Tasks

CodeScaler: Scaling Code LLM Training and Test-Time Inference via Execution-Free Reward Models

A Safety Report on GPT-5.2, Gemini 3 Pro, Qwen3-VL, Grok 4.1 Fast, Nano Banana Pro, and Seedream 4.5

DICE: Diffusion Large Language Models Excel at Generating CUDA Kernels

KernelGYM & Dr. Kernel: A distributed GPU environment and a collection of RL training methods to support RL for Kernel Generations

Dr. Kernel: Reinforcement Learning Done Right for Triton Kernel Generations

Theorizer: from the paper Generating Literature-Driven Scientific Discoveries at Scale

Generating Literature-Driven Scientific Theories at Scale

See all packages

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high performance computing on graphics processing units: hgpu.org

Applications

A New Parallel Method of Smith-Waterman Algorithm on a Heterogeneous Platform

Monte Carlo simulation of photon migration in 3D turbid media accelerated by graphics processing units

GPU Accelerated RNA Folding Algorithm

GPU Parallelization of Algebraic Dynamic Programming

GPU-accelerated differential evolutionary Markov Chain Monte Carlo method for multi-objective optimization over continuous space

GPU-based Monte Carlo simulation for light propagation in complex heterogeneous tissues

Accelerating Correlated Quantum Chemistry Calculations Using Graphical Processing Units

Programming massively parallel processors : A Hands – on approach

A GPU solvent-solvent interaction calculation accelerator for biomolecular simulations using the GROMOS software

Molecular Dynamics on a Grand Scale

The Accelerated Universe

Accelerating Monte Carlo simulations with an NVIDIA graphics processor

Recent source codes

CL4SE: A Context Learning Benchmark For Software Engineering Tasks

CodeScaler: Scaling Code LLM Training and Test-Time Inference via Execution-Free Reward Models

A Safety Report on GPT-5.2, Gemini 3 Pro, Qwen3-VL, Grok 4.1 Fast, Nano Banana Pro, and Seedream 4.5

DICE: Diffusion Large Language Models Excel at Generating CUDA Kernels

KernelGYM & Dr. Kernel: A distributed GPU environment and a collection of RL training methods to support RL for Kernel Generations

Vortex-Optimized Light-weight Toolchain (VOLT)

SciDef: Automated Definition Extraction from Scientific Literature

bioagent-bench: Benchmark for evaluating LLM agents in bioinformatics

Benchmark suite for LLM inference on NVIDIA consumer GPUs

Theorizer: from the paper Generating Literature-Driven Scientific Discoveries at Scale

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