high performance computing on graphics processing units: hgpu.org

Programming

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Accelerating Molecular Dynamics Simulations with GPUs

John Paul Walters, Vidyananth Balu, Vipin Chaudhary, David Kofke, Andrew Schultz

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Tags: Chemistry, CUDA, Molecular dynamics, Molecular simulation, nVidia, nVidia GeForce 8800 GTX

February 28, 2011 by hgpu

Fast and Accurate Generalized Harmonic Analysis and Its Parallel Computation by GPU

Hisayori Noda, Akinori Nishihara

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Tags: Computer science, CUDA, FFT, nVidia

February 28, 2011 by hgpu

A Case Study for Petascale Applications in Astrophysics: Simulating Gamma-Ray Bursts

C. D. Ott, E. Schnetter, G. Allen, E. Seidel, J. Tao, B. Zink

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Tags: Astrophysics, CUDA, Instrumentation and Methods for Astrophysics, nVidia, nVidia Quadro FX 5600

February 28, 2011 by hgpu

A general relativistic evolution code on CUDA architectures

Burkhard Zink

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Tags: Astrophysics, CUDA, Finite difference, Instrumentation and Methods for Astrophysics, nVidia, nVidia Quadro FX 5600

February 28, 2011 by hgpu

HORIZON: Accelerated General Relativistic Magnetohydrodynamics

Burkhard Zink

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Tags: Computational Physics, CUDA, General Relativity and Quantum Cosmology, GPU cluster, Gravitation, Instrumentation and Methods for Astrophysics, Magnetohydrodynamics, MPI, nVidia, nVidia GeForce GTX 580, Tesla C2070

February 28, 2011 by hgpu

Calculation by articificial compressibility method and virtual flux method on GPU

I. Tanno, K. Morinishi, N. Satofuka, Y. Watanabe

Tags: CUDA, Fluid dynamics, nVidia

February 28, 2011 by hgpu

STOCHSIMGPU: Parallel stochastic simulation for the Systems Biology Toolbox 2 for MATLAB

Guido Klingbeil, Radek Erban, Mike Giles, Philip K. Maini

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Source codes

Tags: Bioinformatics, Biology, CUDA, nVidia, nVidia GeForce 8800, Package, Stochastic simulation

February 28, 2011 by hgpu

Automatic data movement and computation mapping for multi-level parallel architectures with explicitly managed memories

Muthu Manikandan Baskaran, Uday Bondhugula, Sriram Krishnamoorthy, J. Ramanujam, Atanas Rountev, P. Sadayappan

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Tags: Algorithms, Code generation, Compilers, Computer science, CUDA, nVidia, nVidia GeForce 8800 GTX, Optimization, Performance

February 28, 2011 by hgpu

Efficient hierarchical parallel genetic algorithms using grid computing

Dudy Lim, Yew-Soon Ong, Yaochu Jin, Bernhard Sendhoff, Bu-Sung Lee

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Tags: Algorithms, Computer science, Genetic programming, Grid

February 27, 2011 by hgpu

Data Mining and Machine Learning in Astronomy

Nicholas M. Ball, Robert J. Brunner

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Tags: Astrophysics, Cosmology and Extragalactic Astrophysics, CUDA, Data mining, Instrumentation and Methods for Astrophysics, nVidia, Review

February 27, 2011 by hgpu

A Method for Accelerating Bronchoscope Tracking Based on Image Registration by GPGPU

Takamasa Sugiura, Daisuke Deguchi, Takayuki Kitasaka, Kensaku Mori, Yasuhito Suenaga

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Tags: Computed tomography, CT, CUDA, Image registration, Medicine, nVidia, nVidia GeForce 8800 GTX

February 27, 2011 by hgpu

CUDAlign: using GPU to accelerate the comparison of megabase genomic sequences

Edans Flavius O. Sandes, Alba Cristina M.A. de Melo

Tags: Bioinformatics, Biology, CUDA, nVidia, nVidia GeForce GTX 280, Sequence alignment, Smith-Waterman algorithm

February 27, 2011 by hgpu

CUDAnalyst (CUDA + Analyst)

Towards Feedback-to-Plan Decisions for Self-Evolving LLM Agents in CUDA Kernel Generation

CodegenBench

CodegenBench: Can LLMs Write Efficient Code Across Architectures?

KernelBenchX: A Comprehensive Benchmark for Evaluating LLM-Generated GPU Kernels

CuTile Benchmark Suite: Performance and Productivity Tradeoffs for GPU Kernel Programming on Blackwell Architecture

Evaluating CUDA Tile for AI Workloads on Hopper and Blackwell GPUs

Device Virtual Machine (DVM)

DVM: Real-Time Kernel Generation for Dynamic AI Models

MegaTrain: Full Precision Training of 100B+ Parameter Large Language Models on a Single GPU

Agentic Code Optimization via Compiler-LLM Cooperation

See all packages

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high performance computing on graphics processing units: hgpu.org

Programming

Accelerating Molecular Dynamics Simulations with GPUs

Fast and Accurate Generalized Harmonic Analysis and Its Parallel Computation by GPU

A Case Study for Petascale Applications in Astrophysics: Simulating Gamma-Ray Bursts

A general relativistic evolution code on CUDA architectures

HORIZON: Accelerated General Relativistic Magnetohydrodynamics

Calculation by articificial compressibility method and virtual flux method on GPU

STOCHSIMGPU: Parallel stochastic simulation for the Systems Biology Toolbox 2 for MATLAB

Automatic data movement and computation mapping for multi-level parallel architectures with explicitly managed memories

Efficient hierarchical parallel genetic algorithms using grid computing

Data Mining and Machine Learning in Astronomy

A Method for Accelerating Bronchoscope Tracking Based on Image Registration by GPGPU

CUDAlign: using GPU to accelerate the comparison of megabase genomic sequences

Recent source codes

CUDAnalyst (CUDA + Analyst)

CodegenBench

KernelBenchX: A Comprehensive Benchmark for Evaluating LLM-Generated GPU Kernels

CUDA Kernel Fusion Benchmarks

IntelliKit: Agent-first tooling for AMD hardware

DITRON: Distributed Compiler based on Triton for Parallel Systems

CuTile Benchmark Suite: Performance and Productivity Tradeoffs for GPU Kernel Programming on Blackwell Architecture

Device Virtual Machine (DVM)

MegaTrain: Full Precision Training of 100B+ Parameter Large Language Models on a Single GPU

Agentic Code Optimization via Compiler-LLM Cooperation

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