high performance computing on graphics processing units: hgpu.org

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Harvesting graphics power for MD simulations

J. A. van Meel, A. Arnold, D. Frenkel, Portegies S. F. Zwart, R. G. Belleman

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Tags: Condensed matter, CUDA, Molecular dynamics, nVidia, nVidia GeForce 8800 GTX, Soft Condensed Matter

November 3, 2010 by hgpu

Real-time Visual Tracker by Stream Processing

Oscar Mateo Lozano, Kazuhiro Otsuka

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Tags: CMP, Computer science, CUDA, nVidia, nVidia GeForce 8800 GTX, Particle filtering, Video tracking

November 3, 2010 by hgpu

Parallel, stochastic measurement of molecular surface area

D. Juba, A. Varshney

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Tags: Chemistry, Computational chemistry, CUDA, Molecular modeling, Molecular surface, nVidia, nVidia GeForce 8800 GTX

November 3, 2010 by hgpu

Neural Network Implementation Using CUDA and OpenMP

Honghoon Jang, Anjin Park, Keechul Jung

Tags: Computer science, CUDA, Neural networks, nVidia, OpenMP

November 3, 2010 by hgpu

High-Precision Numerical Simulations of Rotating Black Holes Accelerated by CUDA

Rakesh Ginjupalli, Gaurav Khanna

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Tags: Astrophysics, Computational Physics, CUDA, General Relativity and Quantum Cosmology, nVidia, Physics, Tesla C1060

November 3, 2010 by hgpu

PAPER – Accelerating parallel evaluations of ROCS

Imran S. Haque, Vijay S. Pande

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Source codes

Tags: Chemistry, Computational chemistry, CUDA, Molecular overlay, nVidia, nVidia GeForce 8600 GT, nVidia GeForce 8800 GTX, nVidia GeForce GTX 280, Package, ROCS, Shape comparison

November 3, 2010 by hgpu

Real-time KD-tree construction on graphics hardware

Kun Zhou, Qiming Hou, Rui Wang, Baining Guo

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Tags: 3D Graphics and Realism, Computer science, CUDA, Image processing, KR-tree, nVidia, nVidia GeForce 8800 Ultra, Raytracing, Rendering

November 3, 2010 by hgpu

Optimal loop unrolling for GPGPU programs (thesis)

Giridhar S. Murthy

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Tags: Computer science, CUDA, nVidia, nVidia GeForce 8800 GTX, nVidia GeForce GTX 280, OpenCL, Review, Thesis

November 3, 2010 by hgpu

Optimal loop unrolling for GPGPU programs

Giridhar S. Murthy, Mahesh Ravishankar, Muthu M. Baskaran, P. Sadayappan

Tags: Computer science, CUDA, nVidia, nVidia GeForce 8800 GTX, nVidia GeForce GTX 280, OpenCL, Review

November 3, 2010 by hgpu

Molecular Dynamics Simulation of Macromolecules Using Graphics Processing Unit

Ji Xu, Ying Ren, Wei Ge, Xiang Yu, Xiaozhen Yang, Jinghai Li

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Tags: CUDA, Macromolecule, Materials Science, Molecular dynamics, nVidia, nVidia GeForce GT 200, Soft Condensed Matter

November 3, 2010 by hgpu

On modelling of anisotropic viscoelasticity for soft tissue simulation: numerical solution and GPU execution

Z. A. Taylor, O. Comas, M. Cheng, J. Passenger, D. J. Hawkes, D. Atkinson, S. Ourselin

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Tags: Anisotropy, CUDA, Finite element method, Medicine, Nonlinear analysis, nVidia GeForce 8800 GTX, Surgical simulation, Viscoelasticity

November 2, 2010 by hgpu

Accelerating Resolution-of-the-Identity Second-Order Moller-Plesset Quantum Chemistry Calculations with Graphical Processing Units

Leslie Vogt, Roberto Olivares-Amaya, Sean Kermes, Yihan Shao, Carlos Amador-Bedolla, Alan Aspuru-Guzik

Tags: Chemistry, Computational chemistry, CUBLAS, CUDA, Molecular modeling, nVidia, nVidia Quadro FX 5600

November 2, 2010 by hgpu

Over-synchronization in GPU Programs

profile_util: simple C++ library to report memory, timing, thread affinity

Profile Util library: A quick and easy way to get MPI, OpenMP and GPU runtime information

MaC: Mamba CPU performance predictor

MambaCPU: Enhanced Correlation Mining with State Space Models for CPU Performance Prediction

Mixed-precision finite element kernels

Mixed-precision finite element kernels and assembly: Rounding error analysis and hardware acceleration

SHMT: The Simultaneous and Heterogenous Multithreading project

General-Purpose Computing on Tensor Processors

Superpipeline: A Universal Approach for Reducing GPU Memory Usage in Large Models

EnergyUCB-Bandit

Online Energy Optimization in GPUs: A Multi-Armed Bandit Approach

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high performance computing on graphics processing units: hgpu.org

Programming

Harvesting graphics power for MD simulations

Real-time Visual Tracker by Stream Processing

Parallel, stochastic measurement of molecular surface area

Neural Network Implementation Using CUDA and OpenMP

High-Precision Numerical Simulations of Rotating Black Holes Accelerated by CUDA

PAPER – Accelerating parallel evaluations of ROCS

Real-time KD-tree construction on graphics hardware

Optimal loop unrolling for GPGPU programs (thesis)

Optimal loop unrolling for GPGPU programs

Molecular Dynamics Simulation of Macromolecules Using Graphics Processing Unit

On modelling of anisotropic viscoelasticity for soft tissue simulation: numerical solution and GPU execution

Accelerating Resolution-of-the-Identity Second-Order Moller-Plesset Quantum Chemistry Calculations with Graphical Processing Units

Recent source codes

Kokkidio: Kokkos+Eigen - write fast, readable multi-platform code

LLaMA-Inference-Bench

MATAR

Over-synchronization in GPU Programs

profile_util: simple C++ library to report memory, timing, thread affinity

MaC: Mamba CPU performance predictor

Mixed-precision finite element kernels

SHMT: The Simultaneous and Heterogenous Multithreading project

Superpipeline: A Universal Approach for Reducing GPU Memory Usage in Large Models

EnergyUCB-Bandit

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