7778

Parallel Implementation of the Wu-Manber Algorithm Using the OpenCL Framework

Themistoklis K. Pyrgiotis, Charalampos S. Kouzinopoulos, Konstantinos G. Margaritis
Parallel and Distributed Processing Laboratory, Department of Applied Informatics, University of Macedonia, 156 Egnatia str., P.O. Box 1591, 54006 Thessaloniki, Greece
Artificial Intelligence Applications and Innovations (AIAI), 2012

@article{pyrgiotis2012parallel,

   title={Parallel Implementation of the Wu-Manber Algorithm Using the OpenCL Framework},

   author={Pyrgiotis, Themistoklis K. and Kouzinopoulos, Charalampos S. and Margaritis, Konstantinos G.},

   year={2012}

}

Download Download (PDF)   View View   Source Source   

1893

views

One of the most significant issues of the computational biology is the multiple pattern matching for locating nucleotides and amino acid sequence patterns into biological databases. Sequential implementations for these processes have become inadequate, due to an increasing demand for more computational power. Graphic cards offer a high parallelism computational power improving the performance of applications. This paper evaluates the performance of the Wu-Manber algorithm implemented with the OpenCL framework, by presenting the running time of the experiments compared with the corresponding sequential time.
No votes yet.
Please wait...

* * *

* * *

Featured events

2018
November
27-30
Hida Takayama, Japan

The Third International Workshop on GPU Computing and AI (GCA), 2018

2018
September
19-21
Nagoya University, Japan

The 5th International Conference on Power and Energy Systems Engineering (CPESE), 2018

2018
September
22-24
MediaCityUK, Salford Quays, Greater Manchester, England

The 10th International Conference on Information Management and Engineering (ICIME), 2018

2018
August
21-23
No. 1037, Luoyu Road, Hongshan District, Wuhan, China

The 4th International Conference on Control Science and Systems Engineering (ICCSSE), 2018

2018
October
29-31
Nanyang Executive Centre in Nanyang Technological University, Singapore

The 2018 International Conference on Cloud Computing and Internet of Things (CCIOT’18), 2018

HGPU group © 2010-2018 hgpu.org

All rights belong to the respective authors

Contact us: