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Parallel Tree Traversal for Nearest Neighbor Query on the GPU

Moohyeon Nam, Jinwoong Kim, Beomseok Nam

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Tags: Algorithms, Biology, Computational biology, Computer science, CUDA, Information Retrieval, Nearest neighbour, nVidia, Tesla K40

September 5, 2016 by hgpu

PROJECTION Algorithm for Motif Finding on GPUs

Jhoirene B. Clemente, Francis George C. Cabarle, Henry N. Adorna

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Tags: Algorithms, Biology, Computational biology, CUDA, nVidia

May 26, 2016 by hgpu

On Longest Repeat Queries Using GPU

Yun Tian, Bojian Xu

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Tags: Biology, Computational biology, Computer science, CUDA, nVidia, nVidia GeForce GTX 660 Ti

January 28, 2015 by hgpu

Hybrid CPU-GPU Pipeline Framework

Fahad Khalid, Frank Feinbube, Andreas Polze

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Tags: Biology, Computational biology, CUDA, Heterogeneous systems, nVidia, nVidia GeForce GTX 680

November 18, 2014 by hgpu

High-accuracy Optimization by Parallel Iterative Discrete Approximation and Multi-GPU Computing

Di Zhao

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Tags: Biology, Computational biology, Computational finance, CUDA, Finance, nVidia, nVidia GeForce GTX 660, Thesis

November 13, 2014 by hgpu

Finding Longest Common Subsequences by GPU-Based Parallel Ant Colony Optimization

David Markvica

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Tags: Algorithms, Biology, Computational biology, Computer science, Heterogeneous systems, Metaheuristics, nVidia, nVidia GeForce GTX 560 Ti, OpenCL, Optimization, Pattern recognition, Thesis

October 27, 2014 by hgpu

On the Efficiency of CPU and Hybrid CPU-GPU Systems in Computational Biology Tasks

Nikolay Pydiura, Pavel Karpov, Yaroslav Blume

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Tags: AMD Radeon R9 280, ATI, Biology, Computational biology, CUDA, Molecular dynamics, nVidia, nVidia GeForce GTX 480, OpenCL

October 25, 2014 by hgpu

Massive exploration of perturbed conditions of the blood coagulation cascade through GPU parallelization

Paolo Cazzaniga, Marco S. Nobile, Daniela Besozzi, Matteo Bellini, Giancarlo Mauri

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Tags: Bioinformatics, Biology, Computational biology, CUDA, Differential equations, nVidia, ODEs, Ordinary differential equations, Tesla K20

May 30, 2014 by hgpu

Communication Optimization for Multi GPU Implementation of Smith-Waterman Algorithm

Sampath Kumar, P. K. Baruah

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Tags: Algorithms, Biology, Computational biology, CUDA, Databases, nVidia, Sequence matching, Smith-Waterman algorithm, Tesla M2050

November 2, 2013 by hgpu

A Distributed CPU-GPU Framework for Pairwise Alignments on Large-Scale Sequence Datasets

Da Li, Kittisak Sajjapongse, Huan Truong, Gavin Conant, Michela Becchi

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Tags: Bioinformatics, Biology, Computational biology, CUDA, GPU cluster, Heterogeneous systems, MPI, nVidia, nVidia Quadro FX 2000, Sequence alignment, Tesla K20

May 11, 2013 by hgpu

Streaming Data from HDD to GPUs for Sustained Peak Performance

Lucas Beyer, Paolo Bientinesi

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Tags: Biology, Computational biology, CUDA, nVidia, nVidia Quadro FX 6000, Tesla S2050

February 20, 2013 by hgpu

High performance bioinformatics and computational biology on general-purpose graphics processing units

Cheng Ling

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Tags: Bioinformatics, Biology, Computational biology, CUDA, FPGA, nVidia, nVidia GeForce 8800 GTX, nVidia GeForce GTX 460, Sequence alignment, Thesis

January 3, 2013 by hgpu

Ginkgo: a high-performance linear algebra library for manycore systems

Preparing Ginkgo for AMD GPUs – A Testimonial on Porting CUDA Code to HIP

GROMACS with CUDA-aware MPI direct GPU communication support

Heterogeneous Parallelization and Acceleration of Molecular Dynamics Simulations in GROMACS

Rodinia_SYCL: The Rodinia Benchmark Suite in SYCL

The Rodinia Benchmark Suite in SYCL

Neural Architecture Search Without Training

Neural Architecture Search without Training

OpenABLext: An extension to OpenABL, a framework to generate high- performance code for agent-based simulations

OpenABLext: An automatic code generation framework for agent-based simulations on CPU-GPU-FPGA heterogeneous platforms

SOFF: SNU OpenCL Framework for FPGAs

SOFF: An OpenCL High-Level Synthesis Framework for FPGAs

GCOOSpDM: Sparse-dense matrix-matrix multiplication on GPUs

Efficient Sparse-Dense Matrix-Matrix Multiplication on GPUs Using the Customized Sparse Storage Format

Programming Your GPU with OpenMP: A Hands-On Introduction

Evaluating the performance of HPC-style SYCL applications

sycl-bench: SYCL Benchmark Suite

SYCL-Bench: A Versatile Single-Source Benchmark Suite for Heterogeneous Computing

BlaBla: A Python package for clinical linguistic feature extraction in multiple languages

BlaBla: Linguistic Feature Extraction for Clinical Analysis in Multiple Languages

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2020

November

24-27

Naha, Okinawa, Japan

The Fifth International Workshop on GPU Computing and AI (GCA), 2020

2021

January

13-15

Shenzhen, China

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2020

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14-16

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14-16

Bangkok, Thailand

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