high performance computing on graphics processing units: hgpu.org

With recent advancement on hardware technologies, new general-purpose high-performance devices have been widely adopted, such as the graphics processing unit (GPU) and solid state drive (SSD). GPU may offer an order of higher throughput for applications with massive data parallelism, compared with the multicore CPU. Moreover, new storage device SSD is also capable of offering […]

In-memory key-value stores play a critical role in data processing to provide high throughput and low latency data accesses. In-memory key-value stores have several unique properties that include (1) data intensive operations demanding high memory bandwidth for fast data accesses, (2) high data parallelism and simple computing operations demanding many slim parallel computing units, and […]

Sorting is a fundamental problem in computer science, and the strict sorting usually means a strict order with ascending or descending. However, some applications in reality don’t require the strict ascending or descending order and the approximate ascending or descending order just meets the requirement. Graphics processing units (GPUs) have become accelerators for parallel computing. […]

Acentrosomal microtubules are not bound to a microtubule organising centre yet are still able to form ordered arrays. Two clear examples of this behaviour are the acentrosomal apico-basal (side wall) array in epithelial cells and the parallel organisation of plant cortical microtubules. This research investigates their formation through mathematical modelling and Monte Carlo simulations with […]

We present texture cache approximation as a method for using existing hardware on GPUs to eliminate costly global memory accesses. We develop a technique for using a GPU’s texture fetch units to generate approximate values, and argue that this technique is applicable to a wide variety of GPU kernels. Applying texture cache approximation to an […]

A GPU code has been developed for a phase-field lattice Boltzmann (PFLB) method, which can simulate the dendritic growth with motion of solids in a dilute binary alloy melt. The GPU accelerated PFLB method has been implemented using CUDA C. The equiaxed dendritic growth in a shear flow and settling condition have been simulated by […]

Sparse coding has been a popular learning model in machine learning field. However, due to the complexity of the learning model, the high computational cost has seriously hindered its application. Toward this purpose, this paper presents a parallel sparse coding method to improve the performance by exploiting the power of acceleration technologies such as Intel […]

Topics: – Agent-based systems – Ant colony optimization – Approximate reasoning – Artificial immune systems – Artificial Intelligence in modelling and simulation – Artificial Intelligence in scheduling and optimization – Artificial life – Bioinformatics and computational biology – Brain-machine interfaces – Cognitive systems and applications – Collective intelligence – Computer vision – Data mining – […]

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Genetic information is increasing exponentially, doubling every 18 months. Analyzing this information within a reasonable amount of time requires parallel computing resources. While considerable research has addressed DNA analysis using GPUs, so far not much attention has been paid to the Intel Xeon Phi coprocessor. In this paper we present an algorithm for large-scale DNA […]

Supervised learning of Convolutional Neural Networks (CNNs), also known as supervised Deep Learning, is a computationally demanding process. To find the most suitable parameters of a network for a given application, numerous training sessions are required. Therefore, reducing the training time per session is essential to fully utilize CNNs in practice. While numerous research groups […]

We present a preliminary study of buffer overflow vulnerabilities in CUDA software running on GPUs. We show how an attacker can overrun a buffer to corrupt sensitive data or steer the execution flow by overwriting function pointers, e.g., manipulating the virtual table of a C++ object. In view of a potential mass market diffusion of […]