high performance computing on graphics processing units: hgpu.org

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Hybrid CUDA, OpenMP, and MPI parallel programming on multicore GPU clusters

Chao-Tung Yang, Chih-Lin Huang, Cheng-Fang Lin

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Tags: Computer science, CUDA, GPU cluster, Hybrid computing, MPI, nVidia, OpenMP, Tesla C1060, Tesla S1070

November 8, 2010 by hgpu

Parallel, distributed and GPU computing technologies in single-particle electron microscopy

M. Schmeisser, B. C. Heisen, M. Luettich, B. Busche, F. Hauer, T. Koske, K. H. Knauber, H. Stark

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Tags: Biology, Cg, Cluster computing, Electron microscopy, GLSL, MPI, nVidia, OpenGL, Physics

November 8, 2010 by hgpu

Phase diagram and critical behavior of the square-lattice Ising model with competing nearest- and next-nearest-neighbor interactions

Junqi Yin, D. P. Landau

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Tags: Computational Physics, CUDA, Ising model, Monte Carlo simulation, MPI, nVidia, nVidia GeForce GTX 285, Phase transition, Physics, Statistical Mechanics

November 8, 2010 by hgpu

MPI within a GPU

Bobby Dalton Young

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Tags: Computer science, CUDA, Data parallelism, MPI, nVidia, nVidia GeForce 8800 GTS, Thesis, Virtualization

November 5, 2010 by hgpu

High-order finite-element seismic wave propagation modeling with MPI on a large GPU cluster

Dimitri Komatitsch, Gordon Erlebacher, Dominik Goddeke, David Michea

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Tags: Computational Physics, CUDA, Finite element method, Geoscience, GPU cluster, MPI, Numerical simulation, nVidia, Physics, Seismic modeling, Spectral elements, Tesla S1060, Tesla S1070

October 29, 2010 by hgpu

CLUEstering: a high-performance density-based clustering library for scientific computing

PyOMP: OpenMP for Python in Numba

PyOMP: Parallel programming for CPUs and GPUs with OpenMP and Python

GPPerf: Energy-Aware GPU Performance Prediction and Optimization Framework

Understanding GEMM Performance and Energy on NVIDIA Ada Lovelace: A Machine Learning-Based Analytical Approach

HiRep

Scaling SU(2) to 1000 GPUs using HiRep

Gaia AVU-GSR

Performance portability via C++ PSTL, SYCL, OpenMP, and HIP: the Gaia AVU-GSR case study

gpuPairHMM: Ultra-fast GPU-based PairHMM for DNA Variant Calling

gpuPairHMM: High-speed Pair-HMM Forward Algorithm for DNA Variant Calling on GPUs

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high performance computing on graphics processing units: hgpu.org

Hybrid CUDA, OpenMP, and MPI parallel programming on multicore GPU clusters

Parallel, distributed and GPU computing technologies in single-particle electron microscopy

Phase diagram and critical behavior of the square-lattice Ising model with competing nearest- and next-nearest-neighbor interactions

MPI within a GPU

High-order finite-element seismic wave propagation modeling with MPI on a large GPU cluster

Recent source codes

tdg-benchs: benchmarks used to test the performance of taskgraph

SW#SYCL

LLOR: Automatic Repair of OpenMP Programs

Solomon: Simple Off-LOading Macros Orchestrating multiple Notations

CLUEstering: a high-performance density-based clustering library for scientific computing

PyOMP: OpenMP for Python in Numba

GPPerf: Energy-Aware GPU Performance Prediction and Optimization Framework

HiRep

Gaia AVU-GSR

gpuPairHMM: Ultra-fast GPU-based PairHMM for DNA Variant Calling

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