high performance computing on graphics processing units: hgpu.org

hgpu.org » nVidia

A New Parallel Method of Smith-Waterman Algorithm on a Heterogeneous Platform

Bo Chen, Yun Xu, Jiaoyun Yang, Haitao Jiang

View

Download (PDF)

Tags: Biology, CUDA, nVidia, nVidia GeForce 9800 GT, Sequence alignment, Smith-Waterman algorithm

December 17, 2010 by hgpu

Monte Carlo simulation of photon migration in 3D turbid media accelerated by graphics processing units

Qianqian Fang, David A. Boas

View

Download (PDF)

Source codes

Tags: CUDA, Monte Carlo simulation, nVidia, nVidia GeForce 8800 GT, Optics, Package, Physics

December 17, 2010 by hgpu

GPU Accelerated RNA Folding Algorithm

Guillaume Rizk, Dominique Lavenier

View

Download (PDF)

Tags: Algorithms, Bioinformatics, Biology, CUDA, nVidia, nVidia GeForce GTX 280, Tesla C870

December 17, 2010 by hgpu

GPU Parallelization of Algebraic Dynamic Programming

Peter Steffen, Robert Giegerich, Mathieu Giraud

View

Download (PDF)

Source codes

Tags: Computer science, CUDA, nVidia, nVidia GeForce GTX 280, Package, Presentation, Programming techniques

December 17, 2010 by hgpu

GPU-accelerated differential evolutionary Markov Chain Monte Carlo method for multi-objective optimization over continuous space

Weihang Zhu, Yaohang Li

View

Download (PDF)

Tags: Mathematics, nVidia, nVidia GeForce GTX 280, Optimization

December 17, 2010 by hgpu

GPU-based Monte Carlo simulation for light propagation in complex heterogeneous tissues

Nunu Ren, Jimin Liang, Xiaochao Qu, Jianfeng Li, Bingjia Lu, Jie Tian

View

Download (PDF)

Source codes

Tags: CUDA, Monte Carlo simulation, nVidia, nVidia GeForce GTX 260, Optics, Package, Physics

December 17, 2010 by hgpu

Accelerating Correlated Quantum Chemistry Calculations Using Graphical Processing Units

Mark Watson, Roberto Olivares-Amaya, Richard G. Edgar, Alan Aspuru-Guzik

View

Download (PDF)

Tags: Chemistry, Computational chemistry, Molecular modeling, nVidia, Tesla C1060

December 17, 2010 by hgpu

Programming massively parallel processors : A Hands – on approach

David B Kirk and Wen-Mei W. Hwu

Tags: Algorithms, Book, Computer science, CUDA, nVidia, OpenCL, Review

December 17, 2010 by hgpu

A GPU solvent-solvent interaction calculation accelerator for biomolecular simulations using the GROMOS software

Nathan Schmid, Mathias Botschi, Wilfred F. Van Gunsteren

Tags: Chemistry, Computational chemistry, CUDA, Molecular dynamics, nVidia, nVidia Quadro FX 5800, Solvent effects

December 17, 2010 by hgpu

Molecular Dynamics on a Grand Scale

Matthew James Mawson Breeze

View

Download (PDF)

Tags: ATI, ATI Radeon X1600, Chemistry, GLSL, Molecular dynamics, nVidia, nVidia GeForce 6200, nVidia GeForce 8800 GTS, OpenGL, Thesis

December 17, 2010 by hgpu

Accelerating Monte Carlo simulations with an NVIDIA graphics processor

Paul Martinsen, Johannes Blaschke, Rainer Kunnemeyer and Robert Jordan

View

Download (PDF)

Tags: CUDA, Monte Carlo simulation, nVidia, nVidia GeForce 8800 GT, Physics

December 16, 2010 by hgpu

Real-time optical micro-manipulation using optimized holograms generated on the GPU

S. Bianchi, R. Di Leonardo

View

Download (PDF)

Tags: Computer holography, CUDA, nVidia, nVidia GeForce GTX 260, Optics, Physics

December 16, 2010 by hgpu

Over-synchronization in GPU Programs

profile_util: simple C++ library to report memory, timing, thread affinity

Profile Util library: A quick and easy way to get MPI, OpenMP and GPU runtime information

MaC: Mamba CPU performance predictor

MambaCPU: Enhanced Correlation Mining with State Space Models for CPU Performance Prediction

Mixed-precision finite element kernels

Mixed-precision finite element kernels and assembly: Rounding error analysis and hardware acceleration

SHMT: The Simultaneous and Heterogenous Multithreading project

General-Purpose Computing on Tensor Processors

See all packages

* * *

high performance computing on graphics processing units: hgpu.org

A New Parallel Method of Smith-Waterman Algorithm on a Heterogeneous Platform

Monte Carlo simulation of photon migration in 3D turbid media accelerated by graphics processing units

GPU Accelerated RNA Folding Algorithm

GPU Parallelization of Algebraic Dynamic Programming

GPU-accelerated differential evolutionary Markov Chain Monte Carlo method for multi-objective optimization over continuous space

GPU-based Monte Carlo simulation for light propagation in complex heterogeneous tissues

Accelerating Correlated Quantum Chemistry Calculations Using Graphical Processing Units

Programming massively parallel processors : A Hands – on approach

A GPU solvent-solvent interaction calculation accelerator for biomolecular simulations using the GROMOS software

Molecular Dynamics on a Grand Scale

Accelerating Monte Carlo simulations with an NVIDIA graphics processor

Real-time optical micro-manipulation using optimized holograms generated on the GPU

Recent source codes

gpuPairHMM: Ultra-fast GPU-based PairHMM for DNA Variant Calling

Gaia AVU-GSR

Kokkidio: Kokkos+Eigen - write fast, readable multi-platform code

LLaMA-Inference-Bench

MATAR

Over-synchronization in GPU Programs

profile_util: simple C++ library to report memory, timing, thread affinity

MaC: Mamba CPU performance predictor

Mixed-precision finite element kernels

SHMT: The Simultaneous and Heterogenous Multithreading project

Most viewed papers (last 30 days)