high performance computing on graphics processing units: hgpu.org

Applications

hgpu.org » Applications » Physics

Parallelizing the QUDA Library for Multi-GPU Calculations in Lattice Quantum Chromodynamics

Ronald Babich, Michael A. Clark, Balint Joo

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Tags: CUDA, GPU cluster, High Energy Physics - Lattice, Monte Carlo simulation, nVidia, nVidia GeForce 8800 GTX, nVidia GeForce GTX 285, nVidia GeForce GTX 480, Package, Physics, QCD, Tesla C1060, Tesla C2050, Tesla C870

November 9, 2010 by hgpu

Numerical modeling of gravitational wave sources accelerated by OpenCL

Gaurav Khanna, Justin McKennon

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Tags: Cell processor, Computational Physics, General Relativity and Quantum Cosmology, Gravitation, nVidia, OpenCL, Physics, Tesla C1060

November 9, 2010 by hgpu

A framework for simulating and estimating the state and functional topology of complex dynamic geometric networks

Marius Buibas, Gabriel A. Silva

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Tags: Biological Physics, Condensed matter, CUDA, Disordered Systems and Neural Networks, Mathematical Physics, Neurons and Cognition, nVidia, Package, Physics, Tesla C1060

November 9, 2010 by hgpu

Fast Calculation of the Lomb-Scargle Periodogram Using Graphics Processing Units

R. H. D. Townsend

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Tags: Astrophysics, CUDA, Instrumentation and Methods for Astrophysics, nVidia, Package, Solar and Stellar Astrophysics, Tesla C1060

November 9, 2010 by hgpu

The Chamomile Scheme: An Optimized Algorithm for N-body simulations on Programmable Graphics Processing Units

Tsuyoshi Hamada, Toshiaki Iitaka

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Tags: Astrophysics, CUDA, N-body simulation, nVidia, nVidia GeForce 8800 GTX, Stellar dynamics

November 9, 2010 by hgpu

Spherical harmonic transform with GPUs

Ioan O. Hupca, Joel Falcou, Laura Grigori, Radek Stompor

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Tags: Astrophysics, Computer science, Cosmology and Extragalactic Astrophysics, CUDA, nVidia, nVidia GeForce GTX 260, nVidia GeForce GTX 480

November 9, 2010 by hgpu

An exploration of CUDA and CBEA for a gravitational wave source-modelling application

Gaurav Khanna, Justin McKennon

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Tags: Cell processor, CUDA, General Relativity and Quantum Cosmology, Gravitation, nVidia, Physics, Tesla C1060

November 9, 2010 by hgpu

High Performance Direct Gravitational N-body Simulations on Graphics Processing Units: An implementation in CUDA (thesis)

Jeroen Bedorf

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Tags: Astrophysics, CUDA, Gravitation, N-body simulation, nVidia, nVidia GeForce 8800 GTX, Package, Stellar dynamics

November 9, 2010 by hgpu

High Performance Direct Gravitational N-body Simulations on Graphics Processing Units

Simon P. Zwart, Robert Belleman, Peter Geldof

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Tags: Astrophysics, Cg, Gravitation, N-body simulation, nVidia, nVidia GeForce 8800 GTX, nVidia Quadro FX 1400, OpenGL, Package, Stellar dynamics

November 9, 2010 by hgpu

Gravitational tree-code on graphics processing units: implementation in CUDA

Evghenii Gaburov, Jeroen Bedorf, Simon P. Zwart

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Tags: Astrophysics, CUDA, Instrumentation and Methods for Astrophysics, nVidia, nVidia GeForce 8800 Ultra, Package, Physics

November 9, 2010 by hgpu

Efficient pseudo-random number generators for biomolecular simulations on graphics processors

A. Zhmurov, K. Rybnikov, Y. Kholodov, V. Barsegov

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Tags: Biological Physics, Chemical Physics, CUDA, nVidia, nVidia GeForce GTX 295, Physics, Pseudo-random number generators

November 9, 2010 by hgpu

Viewpoints: A high-performance high-dimensional exploratory data analysis tool

P.R. Gazis, C. Levit, M.J.Way

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Tags: Astrophysics, Instrumentation and Methods for Astrophysics, nVidia, nVidia GeForce 7950 GTX, OpenGL, Physics, Statistics and Probability, Visualization

November 9, 2010 by hgpu

bioagent-bench: Benchmark for evaluating LLM agents in bioinformatics

BioAgent Bench: An AI Agent Evaluation Suite for Bioinformatics

Benchmark suite for LLM inference on NVIDIA consumer GPUs

Private LLM Inference on Consumer Blackwell GPUs: A Practical Guide for Cost-Effective Local Deployment in SMEs

Theorizer: from the paper Generating Literature-Driven Scientific Discoveries at Scale

Generating Literature-Driven Scientific Theories at Scale

Nsight Python: a Python kernel profiling interface based on NVIDIA Nsight Tools

Nsight Python: A Python-First Profiling Toolkit for Seamless GPU Kernel Analysis (Tool)

Awesome LLM-Driven Kernel Generation

Towards Automated Kernel Generation in the Era of LLMs

PhysProver: Advancing Automatic Theorem Proving for Physics

ParaCodex: A Profiling-Guided Autonomous Coding Agent for Reliable Parallel Code Generation and Translation

SeedFold: Scaling Biomolecular Structure Prediction

Tilus: A Tile-Level GPU Kernel Programming Language

Tilus: A Tile-Level GPGPU Programming Language for Low-Precision Computation

Memory-Efficient Acceleration of Block Low-Rank Foundation Models on Resource Constrained GPUs

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high performance computing on graphics processing units: hgpu.org

Applications

Parallelizing the QUDA Library for Multi-GPU Calculations in Lattice Quantum Chromodynamics

Numerical modeling of gravitational wave sources accelerated by OpenCL

A framework for simulating and estimating the state and functional topology of complex dynamic geometric networks

Fast Calculation of the Lomb-Scargle Periodogram Using Graphics Processing Units

The Chamomile Scheme: An Optimized Algorithm for N-body simulations on Programmable Graphics Processing Units

Spherical harmonic transform with GPUs

An exploration of CUDA and CBEA for a gravitational wave source-modelling application

High Performance Direct Gravitational N-body Simulations on Graphics Processing Units: An implementation in CUDA (thesis)

High Performance Direct Gravitational N-body Simulations on Graphics Processing Units

Gravitational tree-code on graphics processing units: implementation in CUDA

Efficient pseudo-random number generators for biomolecular simulations on graphics processors

Viewpoints: A high-performance high-dimensional exploratory data analysis tool

Recent source codes

bioagent-bench: Benchmark for evaluating LLM agents in bioinformatics

Benchmark suite for LLM inference on NVIDIA consumer GPUs

Theorizer: from the paper Generating Literature-Driven Scientific Discoveries at Scale

Nsight Python: a Python kernel profiling interface based on NVIDIA Nsight Tools

Awesome LLM-Driven Kernel Generation

PhysProver: Advancing Automatic Theorem Proving for Physics

ParaCodex: A Profiling-Guided Autonomous Coding Agent for Reliable Parallel Code Generation and Translation

SeedFold: Scaling Biomolecular Structure Prediction

Tilus: A Tile-Level GPU Kernel Programming Language

Memory-Efficient Acceleration of Block Low-Rank Foundation Models on Resource Constrained GPUs

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