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Binary Interval Search: a scalable algorithm for counting interval intersections

Ryan M. Layer, Kevin Skadron, Gabriel Robins, Ira M. Hall, Aaron R. Quinlan

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Tags: Algorithms, Bioinformatics, Biology, Computer science, CUDA, Monte Carlo simulation, nVidia, Package, Sequence alignment

February 6, 2013 by hgpu

Performance Evaluation of Sparse Matrix Multiplication Kernels on Intel Xeon Phi

Erik Saule, Kamer Kaya, Umit V. Catalyurek

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Tags: Computer science, CUDA, Hardware Architecture, Intel, Intel Phi, Matrix multiplication, nVidia, Performance, Sparse matrix, Tesla C2050, Tesla K20

February 6, 2013 by hgpu

An Implementation of Conflict-Free Offline Permutation on the GPU

Akihiko Kasagi, Koji Nakano, Yasuaki Ito

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Tags: Computer science, CUDA, Memory, Memory model, nVidia, nVidia GeForce GTX 680, Performance

February 6, 2013 by hgpu

Hardware Accelerated Molecular Docking: A Survey

Imre Pechan, Bela Feher

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Tags: Bioinformatics, Biology, CUDA, FPGA, Molecular simulation, nVidia, Tesla C1060

February 6, 2013 by hgpu

Parallel k-Means Image Segmentation Using Sort, Scan & Connected Components on a GPU

Michael Backer, Jan Tunnermann, Barbel Mertsching

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Tags: CUDA, Image processing, nVidia, nVidia GeForce GTX 580

February 6, 2013 by hgpu

Implementation of Fast Artificial Neural Network for Pattern Classification on Heterogeneous System

Devendra Singh Bharangar, Amit Doeger, Yogesh Kumar Mittal

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Tags: ATI, Computer science, Heterogeneous systems, Neural networks, nVidia, OpenCL

February 6, 2013 by hgpu

A Multi-GPU Sources Reconstruction Method for Imaging Applications

Miguel Lopez-Portugues, Yuri Alvarez, Jesus A. Lopez-Fernandez, Cebrian Garcia, Rafael G. Ayestaran, Fernando Las-Heras

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Tags: CUDA, Electrodynamics, GPU cluster, nVidia, nVidia GeForce GTX 560, nVidia GeForce GTX 680, Signal processing

February 6, 2013 by hgpu

Grex: An efficient MapReduce framework for graphics processing units

Can Basaran, Kyoung-Don Kang

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Tags: Computer science, CUDA, MapReduce, nVidia, nVidia GeForce GTX 460

February 5, 2013 by hgpu

GPU-Accelerated High-Accuracy Molecular Docking using Guided Differential Evolution

Martin Simonsen, Mikael H. Christensen, Rene Thomsen, Christian N. S. Pedersen

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Tags: Biology, CUDA, Differential evolution, Medicine, nVidia, nVidia GeForce 8800 GT, Pharmaceuticals

February 5, 2013 by hgpu

Vortex Methods for Fluid Simulation in Computer Graphics

Vines Neuwirth, Mauricio Alfredo

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Tags: Fluid dynamics, Fluid simulation, Thesis

February 5, 2013 by hgpu

A Comparison of CPU and OpenCL Parallelization Methods for Correlation and Graph Layout Algorithms used in the Network Analysis of High Dimensional Data

Athanasios Theocharidis, Gibran Hemani, Michael Kargas, Tom C. Freeman

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Tags: ATI, ATI Radeon HD 5870, ATI Radeon HD 6970, Biology, Graph layout, nVidia, nVidia GeForce GTX 285, nVidia GeForce GTX 580, OpenCL, OpenGL, Package, Visualization

February 5, 2013 by hgpu

Real-Time Phase Masks for Interactive Stimulation of Optogenetic Neurons

Stephan C. Kramer, Johannes Hagemann, D. Russell Luke

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Tags: Biology, CUDA, Mathematics, Neurons and Cognition, nVidia, Optimization, Tesla C2070

February 5, 2013 by hgpu

PROM: an open-source software framework to enhance the robustness and performance of predictive models against such changes during deployment

Enhancing Deployment-Time Predictive Model Robustness for Code Analysis and Optimization

DeepSpeed: a deep learning optimization library that makes distributed training and inference easy, efficient, and effective

Scalable Access-Pattern Aware I/O Acceleration and Multi-Tiered Data Management for HPC and AI Workloads

Reproducible Study and Performance Analysis of GPU Programming Paradigms: OpenACC vs. CUDA in Key Linear Algebra Computations

SW#SYCL

Analyzing the Performance Portability of SYCL across CPUs, GPUs, and Hybrid Systems with Protein Database Search

tdg-benchs: benchmarks used to test the performance of taskgraph

Leveraging the potential of task-based programming with OpenMP task graphs

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high performance computing on graphics processing units: hgpu.org

Applications

Binary Interval Search: a scalable algorithm for counting interval intersections

Performance Evaluation of Sparse Matrix Multiplication Kernels on Intel Xeon Phi

An Implementation of Conflict-Free Offline Permutation on the GPU

Hardware Accelerated Molecular Docking: A Survey

Parallel k-Means Image Segmentation Using Sort, Scan & Connected Components on a GPU

Implementation of Fast Artificial Neural Network for Pattern Classification on Heterogeneous System

A Multi-GPU Sources Reconstruction Method for Imaging Applications

Grex: An efficient MapReduce framework for graphics processing units

GPU-Accelerated High-Accuracy Molecular Docking using Guided Differential Evolution

Vortex Methods for Fluid Simulation in Computer Graphics

A Comparison of CPU and OpenCL Parallelization Methods for Correlation and Graph Layout Algorithms used in the Network Analysis of High Dimensional Data

Real-Time Phase Masks for Interactive Stimulation of Optogenetic Neurons

Recent source codes

PROM: an open-source software framework to enhance the robustness and performance of predictive models against such changes during deployment

DeepSpeed: a deep learning optimization library that makes distributed training and inference easy, efficient, and effective

HPX: a C++ Standard Library for Concurrency and Parallelism

TorchQC: Quantum Dynamics and Machine Learning

Matrix multiplication using Tensor Cores in CUDA

CPP Joules: Energy Measurement tool for CPP/CUDA programs

HPC-Coder-v2

Reproducible Study and Performance Analysis of GPU Programming Paradigms: OpenACC vs. CUDA in Key Linear Algebra Computations

SW#SYCL

tdg-benchs: benchmarks used to test the performance of taskgraph

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