high performance computing on graphics processing units: hgpu.org

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hgpu.org » Applications

MrBayes tgMC3: A Tight GPU Implementation of MrBayes

Cheng Ling, Tsuyoshi Hamada, Jianing Bai, Xianbin Li, Douglas Chesters, Weimin Zheng, Weifeng Shi

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Tags: Algorithms, Bayesian, Computer science, CUDA, nVidia, nVidia GeForce GTX 480, Package

April 18, 2013 by hgpu

B-Calm: an Open-Source Multi-Gpu-Based 3D-FDTD with Multi-Pole Dispersion for Plasmonics

Pierre Wahl, Dany-Sebastien Ly-Gagnon, Christof Debaes, Jurgen Van Erps, Nathalie Vermeulen, David A. B. Miller, Hugo Thienpont

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Tags: Algorithms, CUDA, Electrodynamics, FDTD, Finite-difference time-domain, nVidia, Package, Tesla C2075

April 13, 2013 by hgpu

CUDASW++ 3.0: accelerating Smith-Waterman protein database search by coupling CPU and GPU SIMD instructions

Yongchao Liu, Adrianto Wirawan, Bertil Schmidt

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Tags: Bioinformatics, Biology, CUDA, nVidia, nVidia GeForce GTX 680, nVidia GeForce GTX 690, Package, PTX, Sequence alignment, Smith-Waterman algorithm

April 10, 2013 by hgpu

OpenCL Fast Fourier Transform

Ruobing Li

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Tags: Computer science, FFT, nVidia, OpenCL, Package, Tesla M2070

April 9, 2013 by hgpu

A Performance Comparison of Different Graphics Processing Units Running Direct N-Body Simulations

R. Capuzzo-Dolcettaa, M. Spera

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Tags: Astrophysics, ATI, ATI Radeon HD 6970, ATI Radeon HD 7870, ATI Radeon HD 7970, Gravitation, Instrumentation and Methods for Astrophysics, N-body simulation, nVidia, nVidia GeForce GTX 580, nVidia GeForce GTX 680, OpenCL, Package, Tesla C1060, Tesla C2050, Tesla K20

April 9, 2013 by hgpu

Atomic-free Irregular Computations on GPUs

Rupesh Nasre, Martin Burtscher, Keshav Pingali

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Tags: Algorithms, Computer science, CUDA, Graph theory, nVidia, Package, Performance, Tesla K20

April 7, 2013 by hgpu

Adapting Particle Filter Algorithms to Many-Core Architectures

Mehdi Chitchian, Alexander S. van Amesfoort, Andrea Simonetto, Tamas Keviczky, Henk J. Sips

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Tags: Algorithms, ATI, ATI Radeon HD 6970, ATI Radeon HD 7970, Bayesian, Computer science, Computer vision, CUDA, Filtering, Monte Carlo simulation, nVidia, nVidia GeForce GTX 580, nVidia GeForce GTX 680, OpenCL, Package, Particle filtering

April 4, 2013 by hgpu

Optimising Purely Functional GPU Programs

Trevor L. McDonell, Manuel M. T. Chakravarty, Gabriele Keller, Ben Lippmeier

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Tags: Computer science, CUDA, Haskell, nVidia, Package, Performance, Tesla T10

April 4, 2013 by hgpu

C Language Extensions for Hybrid CPU/GPU Programming with StarPU

Ludovic Courtes

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Tags: Computer science, Hybrid computing, Mathematical Software, MPI, OpenCL, Package

April 4, 2013 by hgpu

A journey from single-GPU to optimized multi-GPU SPH with CUDA

E. Rustico, G. Bilotta, G. Gallo, A. Herault, C. Del Negro, R. A. Dalrymple

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Tags: CUDA, Fluid dynamics, nVidia, nVidia GeForce GTX 480, Package

March 31, 2013 by hgpu

CMCpy: Genetic Code-Message Coevolution Models in Python

Peter J. Becich, Brian P. Stark, Harish S. Bhat, David H. Ardell

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Tags: Bioinformatics, Biology, CUDA, nVidia, nVidia GeForce GTX 460, Package, Python

March 31, 2013 by hgpu

High Performance Computing using GPGPU’s

Omar Usman Khan

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Tags: Electrodynamics, FFT, nVidia, nVidia GeForce GTX 260, OpenCL, Package, Thesis

March 29, 2013 by hgpu

Over-synchronization in GPU Programs

profile_util: simple C++ library to report memory, timing, thread affinity

Profile Util library: A quick and easy way to get MPI, OpenMP and GPU runtime information

MaC: Mamba CPU performance predictor

MambaCPU: Enhanced Correlation Mining with State Space Models for CPU Performance Prediction

Mixed-precision finite element kernels

Mixed-precision finite element kernels and assembly: Rounding error analysis and hardware acceleration

SHMT: The Simultaneous and Heterogenous Multithreading project

General-Purpose Computing on Tensor Processors

Superpipeline: A Universal Approach for Reducing GPU Memory Usage in Large Models

EnergyUCB-Bandit

Online Energy Optimization in GPUs: A Multi-Armed Bandit Approach

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high performance computing on graphics processing units: hgpu.org

Packages

MrBayes tgMC3: A Tight GPU Implementation of MrBayes

B-Calm: an Open-Source Multi-Gpu-Based 3D-FDTD with Multi-Pole Dispersion for Plasmonics

CUDASW++ 3.0: accelerating Smith-Waterman protein database search by coupling CPU and GPU SIMD instructions

OpenCL Fast Fourier Transform

A Performance Comparison of Different Graphics Processing Units Running Direct N-Body Simulations

Atomic-free Irregular Computations on GPUs

Adapting Particle Filter Algorithms to Many-Core Architectures

Optimising Purely Functional GPU Programs

C Language Extensions for Hybrid CPU/GPU Programming with StarPU

A journey from single-GPU to optimized multi-GPU SPH with CUDA

CMCpy: Genetic Code-Message Coevolution Models in Python

High Performance Computing using GPGPU’s

Recent source codes

Kokkidio: Kokkos+Eigen - write fast, readable multi-platform code

LLaMA-Inference-Bench

MATAR

Over-synchronization in GPU Programs

profile_util: simple C++ library to report memory, timing, thread affinity

MaC: Mamba CPU performance predictor

Mixed-precision finite element kernels

SHMT: The Simultaneous and Heterogenous Multithreading project

Superpipeline: A Universal Approach for Reducing GPU Memory Usage in Large Models

EnergyUCB-Bandit

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