high performance computing on graphics processing units: hgpu.org

Applications

hgpu.org » Applications

Exact and complete short-read alignment to microbial genomes using Graphics Processing Unit programming

Jochen Blom, Tobias Jakobi, Daniel Doppmeier, Sebastian Jaenicke, Jorn Kalinowski, Jens Stoye, Alexander Goesmann

Source codes

Tags: Algorithms, Bioinformatics, Biology, CUDA, Next-Generation sequencing, nVidia, Package

May 10, 2011 by hgpu

Fast Parallel Tandem Mass Spectral Library Searching Using GPU Hardware Acceleration

Lydia A. Baumgardner, Avinash K. Shanmugam, Henry Lam, Jimmy K. Eng, Daniel B. Martin

Tags: Biology, Chemistry, CUDA, nVidia, Search, Spectrometry

May 10, 2011 by hgpu

Accelerating image registration of MRI by GPU-based parallel computation

Teng-Yi Huang, Yu-Wei Tang, Shiun-Ying Ju

Tags: Image processing, Image registration, Medicine, MRI

May 10, 2011 by hgpu

Astrophysical particle simulations with large custom GPU clusters on three continents

R. Spurzem, P. Berczik, I. Berentzen, K. Nitadori, T. Hamada, G. Marcus, A. Kugel, R. Männer, J. Fiestas, R. Banerjee, R. Klessen

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Tags: Astrophysics, CUDA, GPU cluster, MPI, N-body simulation, nVidia, Tesla C1060, Tesla C2050

May 10, 2011 by hgpu

Stock trading strategy creation using GP on GPU

Dave McKenney, Tony White

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Tags: Computer science, CUDA, Genetic programming, nVidia

May 10, 2011 by hgpu

Parallel preconditioned conjugate gradient algorithm on GPU

Rudi Helfenstein, Jonas Koko

Tags: Algorithms, Conjugate gradient solver, Mathematics, Sparse matrix

May 10, 2011 by hgpu

Efficient Parallelization of the Stochastic Simulation Algorithm for Chemically Reacting Systems On the Graphics Processing Unit

Hong Li, Linda Petzold

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Tags: Biology, Chemistry, CUDA, nVidia, nVidia GeForce 8800 GTX, Stochastic simulation

May 10, 2011 by hgpu

Twin peaks: a software platform for heterogeneous computing on general-purpose and graphics processors

Jayanth Gummaraju, Laurent Morichetti, Michael Houston, Ben Sander, Benedict R. Gaster, Bixia Zheng

Tags: ATI, Computer science, High-level Languages, OpenCL, Performance, Programming techniques

May 10, 2011 by hgpu

The GPU-based String Matching System in Advanced AC Algorithm

Jiangfeng Peng, Hu Chen, Shaohuai Shi

Tags: Algorithms, Computer science, CUDA, nVidia, String matching

May 9, 2011 by hgpu

GPULib: GPU Computing in High-Level Languages

Peter Messmer, Paul J. Mullowney, Brian E. Granger

Source codes

Tags: Computer science, CUDA, High-level Languages, nVidia, Package

May 9, 2011 by hgpu

GPU-based time parallel cache simulator

Junjie Ma, Han Wan, Xiaopeng Gao, Xiang Long

Tags: Algorithms, Computer science, CUDA, Memory, Memory model, nVidia

May 9, 2011 by hgpu

Rapid motion compensation for prostate biopsy using GPU

Feimo Shen, Ramkrishnan Narayanan, Jasjit S. Suri

Tags: Image registration, Medicine, Ultrasound

May 9, 2011 by hgpu

CUDA-L2: Surpassing cuBLAS Performance for Matrix Multiplication through Reinforcement Learning

BoltzGen:Toward Universal Binder Design

cuPilot: A Strategy-Coordinated Multi-agent Framework for CUDA Kernel Evolution

MATLAB Tensor Core models

Accurate Models of NVIDIA Tensor Cores

TritonForge: Transform PyTorch Operations into Optimized GPU Kernels with LLMs

TritonForge: Profiling-Guided Framework for Automated Triton Kernel Optimization

RLTune: Hybrid Learning and Optimization-Based Dynamic Scheduling for DL Workloads on Heterogeneous GPU Clusters

Hybrid Learning and Optimization-Based Dynamic Scheduling for DL Workloads on Heterogeneous GPU Clusters

tritonBLAS: A Lightweight Triton-based General Matrix Multiplication (GEMM) Library

tritonBLAS: Triton-based Analytical Approach for GEMM Kernel Parameter Selection

hls4ml: Machine learning on FPGAs using HLS

hls4ml: A Flexible, Open-Source Platform for Deep Learning Acceleration on Reconfigurable Hardware

NVIDIA Nemotron Parse 1.1

ThunderKittens: Tile primitives for speedy kernels

ParallelKittens: Systematic and Practical Simplification of Multi-GPU AI Kernels

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high performance computing on graphics processing units: hgpu.org

Applications

Exact and complete short-read alignment to microbial genomes using Graphics Processing Unit programming

Fast Parallel Tandem Mass Spectral Library Searching Using GPU Hardware Acceleration

Accelerating image registration of MRI by GPU-based parallel computation

Astrophysical particle simulations with large custom GPU clusters on three continents

Stock trading strategy creation using GP on GPU

Parallel preconditioned conjugate gradient algorithm on GPU

Efficient Parallelization of the Stochastic Simulation Algorithm for Chemically Reacting Systems On the Graphics Processing Unit

Twin peaks: a software platform for heterogeneous computing on general-purpose and graphics processors

The GPU-based String Matching System in Advanced AC Algorithm

GPULib: GPU Computing in High-Level Languages

GPU-based time parallel cache simulator

Rapid motion compensation for prostate biopsy using GPU

Recent source codes

CUDA-L2: Surpassing cuBLAS Performance for Matrix Multiplication through Reinforcement Learning

BoltzGen:Toward Universal Binder Design

cuPilot: A Strategy-Coordinated Multi-agent Framework for CUDA Kernel Evolution

MATLAB Tensor Core models

TritonForge: Transform PyTorch Operations into Optimized GPU Kernels with LLMs

RLTune: Hybrid Learning and Optimization-Based Dynamic Scheduling for DL Workloads on Heterogeneous GPU Clusters

tritonBLAS: A Lightweight Triton-based General Matrix Multiplication (GEMM) Library

hls4ml: Machine learning on FPGAs using HLS

NVIDIA Nemotron Parse 1.1

ThunderKittens: Tile primitives for speedy kernels

Most viewed papers (last 30 days)