high performance computing on graphics processing units: hgpu.org

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A Cross-Input Adaptive Framework for GPU Programs Optimization

Yixun Liu, Eddy Z. Zhang, Xipeng Shen

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Tags: Computer science, CUDA, High-level Languages, nVidia, nVidia GeForce 8800 GT

December 18, 2010 by hgpu

Fast Software AES Encryption

Dag Osvik, Joppe Bos, Deian Stefan, David Canright

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Tags: Algorithms, Computer science, CUDA, nVidia, nVidia GeForce 8800 GTX, nVidia GeForce GTX 295, Security

December 17, 2010 by hgpu

A New Parallel Method of Smith-Waterman Algorithm on a Heterogeneous Platform

Bo Chen, Yun Xu, Jiaoyun Yang, Haitao Jiang

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Tags: Biology, CUDA, nVidia, nVidia GeForce 9800 GT, Sequence alignment, Smith-Waterman algorithm

December 17, 2010 by hgpu

Monte Carlo simulation of photon migration in 3D turbid media accelerated by graphics processing units

Qianqian Fang, David A. Boas

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Tags: CUDA, Monte Carlo simulation, nVidia, nVidia GeForce 8800 GT, Optics, Package, Physics

December 17, 2010 by hgpu

GPU Accelerated RNA Folding Algorithm

Guillaume Rizk, Dominique Lavenier

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Tags: Algorithms, Bioinformatics, Biology, CUDA, nVidia, nVidia GeForce GTX 280, Tesla C870

December 17, 2010 by hgpu

GPU Parallelization of Algebraic Dynamic Programming

Peter Steffen, Robert Giegerich, Mathieu Giraud

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Tags: Computer science, CUDA, nVidia, nVidia GeForce GTX 280, Package, Presentation, Programming techniques

December 17, 2010 by hgpu

GPU-accelerated differential evolutionary Markov Chain Monte Carlo method for multi-objective optimization over continuous space

Weihang Zhu, Yaohang Li

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Tags: Mathematics, nVidia, nVidia GeForce GTX 280, Optimization

December 17, 2010 by hgpu

GPU-based Monte Carlo simulation for light propagation in complex heterogeneous tissues

Nunu Ren, Jimin Liang, Xiaochao Qu, Jianfeng Li, Bingjia Lu, Jie Tian

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Tags: CUDA, Monte Carlo simulation, nVidia, nVidia GeForce GTX 260, Optics, Package, Physics

December 17, 2010 by hgpu

Programming massively parallel processors : A Hands – on approach

David B Kirk and Wen-Mei W. Hwu

Tags: Algorithms, Book, Computer science, CUDA, nVidia, OpenCL, Review

December 17, 2010 by hgpu

Accelerating Correlated Quantum Chemistry Calculations Using Graphical Processing Units

Mark Watson, Roberto Olivares-Amaya, Richard G. Edgar, Alan Aspuru-Guzik

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Tags: Chemistry, Computational chemistry, Molecular modeling, nVidia, Tesla C1060

December 17, 2010 by hgpu

A GPU solvent-solvent interaction calculation accelerator for biomolecular simulations using the GROMOS software

Nathan Schmid, Mathias Botschi, Wilfred F. Van Gunsteren

Tags: Chemistry, Computational chemistry, CUDA, Molecular dynamics, nVidia, nVidia Quadro FX 5800, Solvent effects

December 17, 2010 by hgpu

Molecular Dynamics on a Grand Scale

Matthew James Mawson Breeze

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Tags: ATI, ATI Radeon X1600, Chemistry, GLSL, Molecular dynamics, nVidia, nVidia GeForce 6200, nVidia GeForce 8800 GTS, OpenGL, Thesis

December 17, 2010 by hgpu

A Safety Report on GPT-5.2, Gemini 3 Pro, Qwen3-VL, Grok 4.1 Fast, Nano Banana Pro, and Seedream 4.5

DICE: Diffusion Large Language Models Excel at Generating CUDA Kernels

KernelGYM & Dr. Kernel: A distributed GPU environment and a collection of RL training methods to support RL for Kernel Generations

Dr. Kernel: Reinforcement Learning Done Right for Triton Kernel Generations

Theorizer: from the paper Generating Literature-Driven Scientific Discoveries at Scale

Generating Literature-Driven Scientific Theories at Scale

Nsight Python: a Python kernel profiling interface based on NVIDIA Nsight Tools

Nsight Python: A Python-First Profiling Toolkit for Seamless GPU Kernel Analysis (Tool)

Awesome LLM-Driven Kernel Generation

Towards Automated Kernel Generation in the Era of LLMs

See all packages

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high performance computing on graphics processing units: hgpu.org

Applications

A Cross-Input Adaptive Framework for GPU Programs Optimization

Fast Software AES Encryption

A New Parallel Method of Smith-Waterman Algorithm on a Heterogeneous Platform

Monte Carlo simulation of photon migration in 3D turbid media accelerated by graphics processing units

GPU Accelerated RNA Folding Algorithm

GPU Parallelization of Algebraic Dynamic Programming

GPU-accelerated differential evolutionary Markov Chain Monte Carlo method for multi-objective optimization over continuous space

GPU-based Monte Carlo simulation for light propagation in complex heterogeneous tissues

Programming massively parallel processors : A Hands – on approach

Accelerating Correlated Quantum Chemistry Calculations Using Graphical Processing Units

A GPU solvent-solvent interaction calculation accelerator for biomolecular simulations using the GROMOS software

Molecular Dynamics on a Grand Scale

Recent source codes

A Safety Report on GPT-5.2, Gemini 3 Pro, Qwen3-VL, Grok 4.1 Fast, Nano Banana Pro, and Seedream 4.5

DICE: Diffusion Large Language Models Excel at Generating CUDA Kernels

KernelGYM & Dr. Kernel: A distributed GPU environment and a collection of RL training methods to support RL for Kernel Generations

Vortex-Optimized Light-weight Toolchain (VOLT)

SciDef: Automated Definition Extraction from Scientific Literature

bioagent-bench: Benchmark for evaluating LLM agents in bioinformatics

Benchmark suite for LLM inference on NVIDIA consumer GPUs

Theorizer: from the paper Generating Literature-Driven Scientific Discoveries at Scale

Nsight Python: a Python kernel profiling interface based on NVIDIA Nsight Tools

Awesome LLM-Driven Kernel Generation

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