high performance computing on graphics processing units: hgpu.org

Applications

hgpu.org » Applications

Fast free-form deformation using graphics processing units

Marc Modat, Gerard R. Ridgway, Zeike A. Taylor, Manja Lehmann, Josephine Barnes, David J. Hawkes, Nick C. Fox, Sebastien Ourselin

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Tags: Biology, CUDA, Image processing, Medicine, nVidia, nVidia GeForce 8800 GTX, Package

November 17, 2010 by hgpu

A Graphics Parallel Memory Organization Exploiting Request Correlations

George Lentaris, Dionysios Reisis

Tags: Computer science, Performance, Storage system

November 17, 2010 by hgpu

permGPU: Using graphics processing units in RNA microarray association studies

Ivo Shterev, Sin H. Jung, Stephen George, Kouros Owzar

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Tags: Bioinformatics, Biology, CUDA, Genetics, nVidia, nVidia GeForce GTX 280, Package, RNA

November 17, 2010 by hgpu

Accelerating Collapsed Variational Bayesian Inference for Latent Dirichlet Allocation with Nvidia CUDA Compatible Devices

Tomonari Masada, Tsuyoshi Hamada, Yuichiro Shibata, Kiyoshi Oguri

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Tags: Computer science, CUDA, Latent Dirichlet allocation, nVidia, nVidia GeForce GTX 260

November 17, 2010 by hgpu

Accelerating simultaneous algebraic reconstruction technique with motion compensation using CUDA-enabled GPU

Wai-Man Pang, Jing Qin, Yuqiang Lu, Yongming Xie, Chee-Kong Chui, Pheng-Ann Heng

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Tags: Computed tomography, CT, CUDA, Image reconstruction, Medicine, Motion compensation, nVidia, nVidia GeForce 8800 GTX

November 17, 2010 by hgpu

Eye-Full Tower: A GPU-based variable multibaseline omnidirectional stereovision system with automatic baseline selection for outdoor mobile robot navigation

Wen L. Lui, Ray Jarvis

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Tags: Computer science, Computer vision, CUDA, nVidia, nVidia GeForce 8800 M GTX

November 17, 2010 by hgpu

SHEsisEpi, a GPU-enhanced genome-wide SNP-SNP interaction scanning algorithm, efficiently reveals the risk of genetic epistasis in bipolar disorder

Xiaohan Hu, Qiang Liu, Zhao Zhang, Zhiqiang Li, Shilin Wang, Lin He, Yongyong Shi

Tags: Bioinformatics, Biology, Genetics

November 17, 2010 by hgpu

Alignator: A GPU powered software package for robust fiducial-less alignment of cryo tilt-series

Daniel Castano-Diez, Margot Scheffer, Ashraf Al-Amoudi, Achilleas S. Frangakis

Tags: Biology, Cryo-electron tomography, Image alignment, Image processing

November 17, 2010 by hgpu

Accelerating the reduction to upper Hessenberg, tridiagonal, and bidiagonal forms through hybrid GPU-based computing

Stanimire Tomov, Rajib Nath, Jack Dongarra

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Tags: BLAS, Computer science, CUBLAS, CUDA, Linear Algebra, nVidia, nVidia GeForce GTX 280, Package

November 17, 2010 by hgpu

Direct numerical simulation of sub-grid structures in gas-solid flow — GPU implementation of macro-scale pseudo-particle modeling

Qingang Xiong, Bo Li, Feiguo Chen, Jingsen Ma, Wei Ge, Jinghai Li

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Tags: Chemistry, Fluid dynamics, Navier-Stokes equations, NSEs, nVidia

November 17, 2010 by hgpu

A multi-GPU accelerated solver for the three-dimensional two-phase incompressible Navier-Stokes equations

Michael Griebel, Peter Zaspel

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Tags: CUDA, Fluid dynamics, MPI, Navier-Stokes equations, NSEs, nVidia, Tesla S1070

November 17, 2010 by hgpu

Fast Bio-Inspired Computation using a GPU-based Systemic Computer

Marjan Rouhipour, Peter J. Bentley, Hooman Shayani

Tags: Biology

November 16, 2010 by hgpu

SimSYCL: Synchronous, single-threaded, library-only SYCL implementation for debugging and verification

SimSYCL: A SYCL Implementation Targeting Development, Debugging, Simulation and Conformance

gpu_tracker: Context manager and CLI that tracks the computational-resource-usage of a code block or shell command, particularly the GPU usage

gpu_tracker: Python package for tracking and profiling GPU utilization in both desktop and high-performance computing environments

CIFAR-10 Airbench: 94% on CIFAR-10 in 3.29 second

94% on CIFAR-10 in 3.29 Seconds on a Single GPU

LOOPer: a polyhedral compiler for expressing fast and portable data parallel algorithms

LOOPer: A Learned Automatic Code Optimizer For Polyhedral Compilers

OpenMC Monte Carlo Code

Performance Portable Monte Carlo Particle Transport on Intel, NVIDIA, and AMD GPUs

Polygeist: C/C++ frontend for MLIR

Retargeting and Respecializing GPU Workloads for Performance Portability

Parallel Gaussian process with kernel approximation in CUDA

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high performance computing on graphics processing units: hgpu.org

Applications

Fast free-form deformation using graphics processing units

A Graphics Parallel Memory Organization Exploiting Request Correlations

permGPU: Using graphics processing units in RNA microarray association studies

Accelerating Collapsed Variational Bayesian Inference for Latent Dirichlet Allocation with Nvidia CUDA Compatible Devices

Accelerating simultaneous algebraic reconstruction technique with motion compensation using CUDA-enabled GPU

Eye-Full Tower: A GPU-based variable multibaseline omnidirectional stereovision system with automatic baseline selection for outdoor mobile robot navigation

SHEsisEpi, a GPU-enhanced genome-wide SNP-SNP interaction scanning algorithm, efficiently reveals the risk of genetic epistasis in bipolar disorder

Alignator: A GPU powered software package for robust fiducial-less alignment of cryo tilt-series

Accelerating the reduction to upper Hessenberg, tridiagonal, and bidiagonal forms through hybrid GPU-based computing

Direct numerical simulation of sub-grid structures in gas-solid flow — GPU implementation of macro-scale pseudo-particle modeling

A multi-GPU accelerated solver for the three-dimensional two-phase incompressible Navier-Stokes equations

Fast Bio-Inspired Computation using a GPU-based Systemic Computer

Recent source codes

SimSYCL: Synchronous, single-threaded, library-only SYCL implementation for debugging and verification

GPU plugin for PySCF

QArray

Celerity: High-level C++ for Accelerator Clusters

gpu_tracker: Context manager and CLI that tracks the computational-resource-usage of a code block or shell command, particularly the GPU usage

CIFAR-10 Airbench: 94% on CIFAR-10 in 3.29 second

LOOPer: a polyhedral compiler for expressing fast and portable data parallel algorithms

OpenMC Monte Carlo Code

Polygeist: C/C++ frontend for MLIR

Parallel Gaussian process with kernel approximation in CUDA

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