high performance computing on graphics processing units: hgpu.org

Programming

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Optimizations in Bioinformatics using GPU Processing on Binary Data

Manuel Belmadani

Tags: Algorithms, Bioinformatics, Biology, CUDA, nVidia, nVidia GeForce GTX 285

January 8, 2013 by hgpu

Portable Mapping of Data Parallel Programs to OpenCL for Heterogeneous Systems

Dominik Grewe, Zheng Wang, Michael F.P. O'Boyle

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Tags: ATI, ATI Radeon HD 7970, Compilers, Computer science, Heterogeneous systems, Machine learning, nVidia, nVidia GeForce GTX 580, OpenCL, Programming Languages

January 8, 2013 by hgpu

High Performance Multi-dimensional (2D/3D) FFT-Shift Implementation on Graphics Processing Units (GPUs)

Marwan Abdellah, Salah Saleh, Ayman Eldeib, Amr Shaarawi

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Tags: CUDA, FFT, nVidia, nVidia GeForce GTX 570, Rendering, Signal processing

January 8, 2013 by hgpu

Implementation of FDTD-Compatible Green’s Function on Heterogeneous CPU-GPU Parallel Processing System

Tomasz P. Stefanski

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Tags: CUDA, Electrodynamics, FDTD, Finite-difference time-domain, Heterogeneous systems, nVidia, nVidia GeForce GTX 680

January 8, 2013 by hgpu

Efficient Weighted Histogramming on GPUs with CUDA

Mo Xu, Ningyi Xu, Chunshui Zhao, Feng-Hsiung Hsu

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Tags: Computer science, CUDA, Data mining, Machine learning, nVidia, nVidia GeForce GTX 580

January 8, 2013 by hgpu

Distributed Massive Model Rendering

Revanth N R, P. J. Narayanan

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Tags: 3D Graphics and Realism, Computer science, CUDA, nVidia, nVidia GeForce 8600 GTS, nVidia GeForce GTX 280, nVidia GeForce GTX 480, nVidia GeForce GTX 580, nVidia Quadro FX 3700 M, Rendering, Tesla C2050, Tesla C2070, Tesla S1070

January 8, 2013 by hgpu

GPU-Optimized Coarse-Grained MD Simulations of Protein and RNA Folding and Assembly

Andrew J. Proctor, Tyson J. Lipscomb, Anqi Zou, Joshua A. Anderson, Samuel S. Cho

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Tags: Bioinformatics, Biology, CUDA, Macromolecule, Molecular dynamics, nVidia, RNA, Tesla C2070

January 8, 2013 by hgpu

CUDA based iterative methods for linear systems

Bogdan Oancea

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Tags: Computer science, CUDA, Linear Algebra, nVidia, nVidia GeForce GTX 280

January 7, 2013 by hgpu

Performance comparison of gauss-Jordan elimination method using OpenMP and CUDA

Baha Sen, Nesrin Aydin Atasoy, Caner Ozcan

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Tags: Computer science, CUDA, nVidia, nVidia GeForce 9500 GT, OpenMP, Performance, Programming techniques

January 7, 2013 by hgpu

Numerical computations in Java with CUDA

Bogdan Oancea, Tudorel Andrei, Andreea Iluzia Iacob

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Tags: Computer science, CUBLAS, CUDA, Java, Linear Algebra, nVidia, nVidia GeForce 9500 GT

January 7, 2013 by hgpu

Interactive Refactoring for GPU Parallelization of Affine Loops

Kostadin Damevski, Madhan Muralimanohar

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Tags: Code generation, Computer science, CUDA, Heterogeneous systems, nVidia, nVidia Quadro FX 2000

January 7, 2013 by hgpu

High-throughput Analysis of Large Microscopy Image Datasets on CPU-GPU Cluster Platforms

George Teodoro, Tony Pan, Tahsin M. Kurc, Jun Kong, Lee A. D. Cooper, Norbert Podhorszki, Scott Klasky, Joel H. Saltz

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Tags: CUDA, GPU cluster, Image processing, Microscopy, nVidia, Prefetch, Tesla M2090

January 6, 2013 by hgpu

Over-synchronization in GPU Programs

profile_util: simple C++ library to report memory, timing, thread affinity

Profile Util library: A quick and easy way to get MPI, OpenMP and GPU runtime information

MaC: Mamba CPU performance predictor

MambaCPU: Enhanced Correlation Mining with State Space Models for CPU Performance Prediction

Mixed-precision finite element kernels

Mixed-precision finite element kernels and assembly: Rounding error analysis and hardware acceleration

SHMT: The Simultaneous and Heterogenous Multithreading project

General-Purpose Computing on Tensor Processors

Superpipeline: A Universal Approach for Reducing GPU Memory Usage in Large Models

EnergyUCB-Bandit

Online Energy Optimization in GPUs: A Multi-Armed Bandit Approach

See all packages

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high performance computing on graphics processing units: hgpu.org

Programming

Optimizations in Bioinformatics using GPU Processing on Binary Data

Portable Mapping of Data Parallel Programs to OpenCL for Heterogeneous Systems

High Performance Multi-dimensional (2D/3D) FFT-Shift Implementation on Graphics Processing Units (GPUs)

Implementation of FDTD-Compatible Green’s Function on Heterogeneous CPU-GPU Parallel Processing System

Efficient Weighted Histogramming on GPUs with CUDA

Distributed Massive Model Rendering

GPU-Optimized Coarse-Grained MD Simulations of Protein and RNA Folding and Assembly

CUDA based iterative methods for linear systems

Performance comparison of gauss-Jordan elimination method using OpenMP and CUDA

Numerical computations in Java with CUDA

Interactive Refactoring for GPU Parallelization of Affine Loops

High-throughput Analysis of Large Microscopy Image Datasets on CPU-GPU Cluster Platforms

Recent source codes

Kokkidio: Kokkos+Eigen - write fast, readable multi-platform code

LLaMA-Inference-Bench

MATAR

Over-synchronization in GPU Programs

profile_util: simple C++ library to report memory, timing, thread affinity

MaC: Mamba CPU performance predictor

Mixed-precision finite element kernels

SHMT: The Simultaneous and Heterogenous Multithreading project

Superpipeline: A Universal Approach for Reducing GPU Memory Usage in Large Models

EnergyUCB-Bandit

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