Programming

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Kernel Fusion: An Effective Method for Better Power Efficiency on Multithreaded GPU

Guibin Wang, YiSong Lin, Wei Yi

Tags: Computer science, CUDA, Energy-efficient computing, nVidia

April 9, 2011 by hgpu

A simple and efficient way to compute depth maps for multi-view videos

Gael Sourimant

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Tags: Algorithms, Computer science, Computer vision, Optical flow, Video tracking

April 9, 2011 by hgpu

Data-parallel algorithms for large-scale real-time simulation of the cellular potts model on graphics processing units

Jose Juan Tapia, Roshan D'Souza

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Tags: Biophysics, CUDA, Data Structures and Algorithms, nVidia, nVidia GeForce GTX 280, OpenGL, Physics, Programming techniques

April 9, 2011 by hgpu

A Parallel Gibbs Sampling Algorithm for Motif Finding on GPU

Linbin Yu, Yun Xu

Tags: Bioinformatics, Biology, CUDA, nVidia, Sequence matching

April 9, 2011 by hgpu

Parallel Dense Gauss-Seidel Algorithm on Many-Core Processors

H. Courtecuisse, J. Allard

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Source codes

Tags: Algorithms, Computer science, CUDA, Medicine, nVidia, nVidia GeForce GTX 280, Package, Physics-based simulation, Surgical simulation

April 8, 2011 by hgpu

Optimize or Wait? Using llc Fast-Prototyping Tool to Evaluate CUDA Optimizations

Ruyman Reyes, Francisco de Sande

Tags: Computer science, CUDA, nVidia, Optimization

April 8, 2011 by hgpu

High-Speed Implementations of Block Cipher ARIA Using Graphics Processing Units

Yongjin Yeom, Yongkuk Cho, Moti Yung

Tags: Block Ciphers, Computer science, CUDA, Hardware Architecture, nVidia, nVidia GeForce 8800 GTS, OpenGL, Security

April 8, 2011 by hgpu

Record Setting Software Implementation of DES Using CUDA

G. Agosta, A. Barenghi, F. De Santis, G. Pelosi

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Tags: Computer science, CUDA, nVidia, nVidia GeForce GTX 250, nVidia GeForce GTX 260, nVidia GeForce GTX 275, nVidia GeForce GTX 285, nVidia GeForce GTX 295, Security

April 8, 2011 by hgpu

On accelerating iterative algorithms with CUDA: A case study on Conditional Random Fields training algorithm for biological sequence alignment

Zhihui Du, Zhaoming Yin, Wenjie Liu, D. Bader

Tags: Bioinformatics, Biology, CUDA, nVidia, Sequence alignment

April 8, 2011 by hgpu

Program Optimization of Array-Intensive SPEC2k Benchmarks on Multithreaded GPU Using CUDA and Brook+

Guibin Wang, Tao Tang, Xudong Fang, Xiaoguang Ren

Tags: Benchmarking, Brook, Computer science, CUDA, nVidia, Performance

April 8, 2011 by hgpu

CANSCID-CUDA

Michael Steffen, Veerendra Allada, Phillip Jones and Joseph Zambreno

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Tags: Computer science, CUDA, nVidia, Python, String matching, Tesla

April 8, 2011 by hgpu

Shape Manipulation on GPU

Hongqian Chen, Tianyu Huang, Fengxia Li, Shouyi Zhan

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Tags: 3D Graphics and Realism, Algorithms, Computer science, nVidia, nVidia GeForce 6600, OpenGL, Rendering

April 8, 2011 by hgpu

bioagent-bench: Benchmark for evaluating LLM agents in bioinformatics

BioAgent Bench: An AI Agent Evaluation Suite for Bioinformatics

Benchmark suite for LLM inference on NVIDIA consumer GPUs

Private LLM Inference on Consumer Blackwell GPUs: A Practical Guide for Cost-Effective Local Deployment in SMEs

Theorizer: from the paper Generating Literature-Driven Scientific Discoveries at Scale

Generating Literature-Driven Scientific Theories at Scale

Nsight Python: a Python kernel profiling interface based on NVIDIA Nsight Tools

Nsight Python: A Python-First Profiling Toolkit for Seamless GPU Kernel Analysis (Tool)

Awesome LLM-Driven Kernel Generation

Towards Automated Kernel Generation in the Era of LLMs

PhysProver: Advancing Automatic Theorem Proving for Physics

ParaCodex: A Profiling-Guided Autonomous Coding Agent for Reliable Parallel Code Generation and Translation

SeedFold: Scaling Biomolecular Structure Prediction

Tilus: A Tile-Level GPU Kernel Programming Language

Tilus: A Tile-Level GPGPU Programming Language for Low-Precision Computation

Memory-Efficient Acceleration of Block Low-Rank Foundation Models on Resource Constrained GPUs

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high performance computing on graphics processing units: hgpu.org

Programming

Kernel Fusion: An Effective Method for Better Power Efficiency on Multithreaded GPU

A simple and efficient way to compute depth maps for multi-view videos

Data-parallel algorithms for large-scale real-time simulation of the cellular potts model on graphics processing units

A Parallel Gibbs Sampling Algorithm for Motif Finding on GPU

Parallel Dense Gauss-Seidel Algorithm on Many-Core Processors

Optimize or Wait? Using llc Fast-Prototyping Tool to Evaluate CUDA Optimizations

High-Speed Implementations of Block Cipher ARIA Using Graphics Processing Units

Record Setting Software Implementation of DES Using CUDA

On accelerating iterative algorithms with CUDA: A case study on Conditional Random Fields training algorithm for biological sequence alignment

Program Optimization of Array-Intensive SPEC2k Benchmarks on Multithreaded GPU Using CUDA and Brook+

CANSCID-CUDA

Shape Manipulation on GPU

Recent source codes

bioagent-bench: Benchmark for evaluating LLM agents in bioinformatics

Benchmark suite for LLM inference on NVIDIA consumer GPUs

Theorizer: from the paper Generating Literature-Driven Scientific Discoveries at Scale

Nsight Python: a Python kernel profiling interface based on NVIDIA Nsight Tools

Awesome LLM-Driven Kernel Generation

PhysProver: Advancing Automatic Theorem Proving for Physics

ParaCodex: A Profiling-Guided Autonomous Coding Agent for Reliable Parallel Code Generation and Translation

SeedFold: Scaling Biomolecular Structure Prediction

Tilus: A Tile-Level GPU Kernel Programming Language

Memory-Efficient Acceleration of Block Low-Rank Foundation Models on Resource Constrained GPUs

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