high performance computing on graphics processing units: hgpu.org

Programming

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Gravitational tree-code on graphics processing units: implementation in CUDA

Evghenii Gaburov, Jeroen Bedorf, Simon P. Zwart

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Tags: Astrophysics, CUDA, Instrumentation and Methods for Astrophysics, nVidia, nVidia GeForce 8800 Ultra, Package, Physics

November 9, 2010 by hgpu

Efficient pseudo-random number generators for biomolecular simulations on graphics processors

A. Zhmurov, K. Rybnikov, Y. Kholodov, V. Barsegov

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Tags: Biological Physics, Chemical Physics, CUDA, nVidia, nVidia GeForce GTX 295, Physics, Pseudo-random number generators

November 9, 2010 by hgpu

Massively parallel differential evolution-pattern search optimization with graphics hardware acceleration: an investigation on bound constrained optimization problems

Weihang Zhu

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Tags: Computer science, CUDA, Differential evolution, Finance, nVidia, nVidia GeForce GTX 280, Pattern Search

November 9, 2010 by hgpu

ABC-SysBio–approximate Bayesian computation in Python with GPU support

Juliane Liepe, Chris Barnes, Erika Cule, Kamil Erguler, Paul Kirk, Tina Toni, Michael P. H. Stumpf

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Tags: Bioinformatics, Biology, CUDA, nVidia, Package, Python

November 9, 2010 by hgpu

DiVinE-CUDA – A Tool for GPU Accelerated LTL Model Checking

Jiri Barnat, Lubos Brim, Milan Ceska

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Tags: Computer science, CUDA, Distributed computing, nVidia, nVidia GeForce GTX 280, Software Engineering

November 9, 2010 by hgpu

Solving $k$-Nearest Vector Problem on Multiple Graphics Processors

Kimikazu Kato, Tikara Hosino

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Tags: Computer science, CUDA, Data Structures and Algorithms, Information Retrieval, Neural and Evolutionary Computing, nVidia, nVidia GeForce GTX 280

November 8, 2010 by hgpu

On the utility of graphics cards to perform massively parallel simulation of advanced Monte Carlo methods

Anthony Lee, Christopher Yau, Michael B. Giles, Arnaud Doucet, Christopher C. Holmes

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Tags: CUDA, Mathematics, Monte Carlo simulation, nVidia, nVidia GeForce 8800 GT, nVidia GeForce GTX 280, Package, Statistics

November 8, 2010 by hgpu

Analysing Astronomy Algorithms for GPUs and Beyond

Benjamin R. Barsdell, David G. Barnes, Christopher J. Fluke

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Tags: Algorithms, Astrophysics, Instrumentation and Methods for Astrophysics, Physics

November 8, 2010 by hgpu

Integrating Post-Newtonian Equations on Graphics Processing Units

Frank Herrmann, John Silberholz, Matias Bellone, Gustavo Guerberoff, Manuel Tiglio

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Tags: Astrophysics, Cosmology and Extragalactic Astrophysics, CUDA, Earth and Planetary Astrophysics, Galaxy Astrophysics, General Relativity and Quantum Cosmology, High Energy Astrophysical Phenomena, Instrumentation and Methods for Astrophysics, nVidia, Physics, Solar and Stellar Astrophysics, Tesla S1070

November 8, 2010 by hgpu

N-Body Simulations on GPUs

Erich Elsen, V. Vishal, Mike Houston, Vijay Pande, Pat Hanrahan, Eric Darve

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Tags: ATI, ATI Radeon X1900, ATI Stream, Brook, Computational Engineering, Computer science, Molecular dynamics, N-body simulation, Stellar dynamics

November 8, 2010 by hgpu

Graphic-Card Cluster for Astrophysics (GraCCA) – Performance Tests

Hsi-Yu Schive, Chia-Hung Chien, Shing-Kwong Wong, Yu-Chih Tsai, Tzihong Chiueh

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Tags: Astrophysics, CUDA, GPU cluster, Gravitation, MPI, N-body simulation, nVidia, nVidia GeForce 8800 GTX, Physics, Stellar dynamics

November 8, 2010 by hgpu

Quantile Mechanics II: Changes of Variables in Monte Carlo methods and a GPU-Optimized Normal Quantile

William T. Shaw, Nick Brickman

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Tags: Computational finance, CUDA, Finance, Monte Carlo simulation, nVidia, nVidia GeForce GTX 285, nVidia GeForce GTX 480, nVidia Quadro FX 4800, Risk Management, Statistical Finance

November 8, 2010 by hgpu

bioagent-bench: Benchmark for evaluating LLM agents in bioinformatics

BioAgent Bench: An AI Agent Evaluation Suite for Bioinformatics

Benchmark suite for LLM inference on NVIDIA consumer GPUs

Private LLM Inference on Consumer Blackwell GPUs: A Practical Guide for Cost-Effective Local Deployment in SMEs

Theorizer: from the paper Generating Literature-Driven Scientific Discoveries at Scale

Generating Literature-Driven Scientific Theories at Scale

Nsight Python: a Python kernel profiling interface based on NVIDIA Nsight Tools

Nsight Python: A Python-First Profiling Toolkit for Seamless GPU Kernel Analysis (Tool)

Awesome LLM-Driven Kernel Generation

Towards Automated Kernel Generation in the Era of LLMs

PhysProver: Advancing Automatic Theorem Proving for Physics

ParaCodex: A Profiling-Guided Autonomous Coding Agent for Reliable Parallel Code Generation and Translation

SeedFold: Scaling Biomolecular Structure Prediction

Tilus: A Tile-Level GPU Kernel Programming Language

Tilus: A Tile-Level GPGPU Programming Language for Low-Precision Computation

Memory-Efficient Acceleration of Block Low-Rank Foundation Models on Resource Constrained GPUs

See all packages

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high performance computing on graphics processing units: hgpu.org

Programming

Gravitational tree-code on graphics processing units: implementation in CUDA

Efficient pseudo-random number generators for biomolecular simulations on graphics processors

Massively parallel differential evolution-pattern search optimization with graphics hardware acceleration: an investigation on bound constrained optimization problems

ABC-SysBio–approximate Bayesian computation in Python with GPU support

DiVinE-CUDA – A Tool for GPU Accelerated LTL Model Checking

Solving $k$-Nearest Vector Problem on Multiple Graphics Processors

On the utility of graphics cards to perform massively parallel simulation of advanced Monte Carlo methods

Analysing Astronomy Algorithms for GPUs and Beyond

Integrating Post-Newtonian Equations on Graphics Processing Units

N-Body Simulations on GPUs

Graphic-Card Cluster for Astrophysics (GraCCA) – Performance Tests

Quantile Mechanics II: Changes of Variables in Monte Carlo methods and a GPU-Optimized Normal Quantile

Recent source codes

bioagent-bench: Benchmark for evaluating LLM agents in bioinformatics

Benchmark suite for LLM inference on NVIDIA consumer GPUs

Theorizer: from the paper Generating Literature-Driven Scientific Discoveries at Scale

Nsight Python: a Python kernel profiling interface based on NVIDIA Nsight Tools

Awesome LLM-Driven Kernel Generation

PhysProver: Advancing Automatic Theorem Proving for Physics

ParaCodex: A Profiling-Guided Autonomous Coding Agent for Reliable Parallel Code Generation and Translation

SeedFold: Scaling Biomolecular Structure Prediction

Tilus: A Tile-Level GPU Kernel Programming Language

Memory-Efficient Acceleration of Block Low-Rank Foundation Models on Resource Constrained GPUs

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