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Speeding up Scoring Module of Mass Spectrometry Based Protein Identification by GPU

You Li, Xiaowen Chu

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Tags: Bioinformatics, Biology, CUDA, Databases, nVidia, nVidia GeForce GTX 280, Spectrometry

September 25, 2012 by hgpu

Parallelization of Hierarchical Text Clustering on Multi-core CUDA Architecture

Atul Bagga, Durga Toshniwal

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Tags: Clustering, Computer science, CUDA, Databases, Hierarchical clustering, nVidia, nVidia GeForce 8800 GTX

September 21, 2012 by hgpu

A GPU operations framework for WattDB

Vitor Uwe Reus

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Tags: Computer science, CUDA, Databases, nVidia, nVidia GeForce GT 430, Thesis

September 17, 2012 by hgpu

Accelerating the Smith-Waterman Algorithm for Bio-sequence Matching on GPU

Qianghua Zhu, Fei Xia, Guoqing Jin

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Tags: Algorithms, Bioinformatics, Biology, CUDA, Databases, nVidia, nVidia GeForce GTX 470, Sequence alignment, Sequence matching, Smith-Waterman algorithm

September 16, 2012 by hgpu

High-Throughput parallel blind Virtual Screening using BINDSURF

Irene Sanchez-Linares, Horacio Perez-Sanchez, Jose M Cecilia, Jose M Garcia

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Tags: Bioinformatics, Biology, CUDA, Databases, nVidia, Tesla C2050

September 15, 2012 by hgpu

A First Step Towards GPU-assisted Query Optimization

Max Heimel, Volker Markl

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Source codes

Tags: Computer science, Databases, nVidia, nVidia GeForce GTX 460, OpenCL, Optimization, Package

September 11, 2012 by hgpu

A Parallel Twig Join Algorithm for XML Processing using a GPGPU

Lila Shnaiderman, Oded Shmueli

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Tags: Algorithms, Benchmarking, Computer science, CUDA, Databases, nVidia, nVidia GeForce GTX 480

September 10, 2012 by hgpu

A GPGPU Implementation of Approximate String Matching with Regular Expression Operators and Comparison with Its FPGA Implementation

Yuichiro Utan, Masato Inagi, Shin'ichi Wakabayashi, Shinobu Nagayama

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Tags: Algorithms, Computer science, CUDA, Databases, FPGA, nVidia, String matching, Tesla C2070

September 5, 2012 by hgpu

Approximate Similarity Search for Online Multimedia Services on Distributed CPU-GPU Platforms

George Teodoro, Eduardo Valle, Nathan Mariano, Ricardo Torres, Wagner Meira Jr, Joel H. Saltz

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Tags: Algorithms, Computer science, CUDA, Databases, Nearest neighbour, nVidia, nVidia GeForce GTX 260, nVidia GeForce GTX 470

September 4, 2012 by hgpu

Massive parallelization of serial inference algorithms for a complex generalized linear model

Marc A. Suchard, Shawn E. Simpson, Ivan Zorych, Patrick Ryan, David Madigan

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Tags: Algorithms, CUDA, Databases, Mathematics, nVidia, Statistics, Tesla C2050

August 9, 2012 by hgpu

Optimizing Data Warehousing Applications for GPUs Using Kernel Fusion/Fission

Haicheng Wu, Gregory Diamos, Ashwin Lele, Jin Wang, Srihari Cadambi, Sudhakar Yalamanchili, Srimat Chakradhar

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Tags: Compilers, Computer science, CUDA, Databases, nVidia, Optimization, Tesla C2070

August 9, 2012 by hgpu

Accelerating Pathology Image Data Cross-Comparison on CPU-GPU Hybrid Systems

Kaibo Wang, Yin Huai, Rubao Lee, Fusheng Wang, Xiaodong Zhang, Joel H. Saltz

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Tags: CUDA, Databases, Image processing, nVidia, nVidia GeForce GTX 580, Tesla M2050

August 2, 2012 by hgpu

Data-efficient LLM Fine-tuning for Code Generation

DeepSpeed is a deep learning optimization library that makes distributed training and inference easy, efficient, and effective.

DeepCompile: A Compiler-Driven Approach to Optimizing Distributed Deep Learning Training

Large Language Model Powered C-to-CUDA Code Translation: A Novel Auto-Parallelization Framework

GigaAPI: a user-space API that simplifies multi-GPU programming, bridging the gap between the capabilities of parallel GPU systems and the ability of developers to harness their full potential

GigaAPI for GPU Parallelization

Coccinelle: a C code transformation engine using SmPL for matches, refactorings, and bug fixing

Advances in Semantic Patching for HPC-oriented Refactorings with Coccinelle

DuoReduce: MLIR's benchmark

Hardware-Assisted Software Testing and Debugging for Heterogeneous Computing

See all packages

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high performance computing on graphics processing units: hgpu.org

Speeding up Scoring Module of Mass Spectrometry Based Protein Identification by GPU

Parallelization of Hierarchical Text Clustering on Multi-core CUDA Architecture

A GPU operations framework for WattDB

Accelerating the Smith-Waterman Algorithm for Bio-sequence Matching on GPU

High-Throughput parallel blind Virtual Screening using BINDSURF

A First Step Towards GPU-assisted Query Optimization

A Parallel Twig Join Algorithm for XML Processing using a GPGPU

A GPGPU Implementation of Approximate String Matching with Regular Expression Operators and Comparison with Its FPGA Implementation

Approximate Similarity Search for Online Multimedia Services on Distributed CPU-GPU Platforms

Massive parallelization of serial inference algorithms for a complex generalized linear model

Optimizing Data Warehousing Applications for GPUs Using Kernel Fusion/Fission

Accelerating Pathology Image Data Cross-Comparison on CPU-GPU Hybrid Systems

Recent source codes

PELSI: Power-Efficient Layer-Switched Inference

Ouroboros: Virtualized Queues for dynamic memory management

MSCCL++: A GPU-driven communication stack for scalable AI applications

Benchmark compute shader of Unity against InteropUnityCUDA

Data-efficient LLM Fine-tuning for Code Generation

DeepSpeed is a deep learning optimization library that makes distributed training and inference easy, efficient, and effective.

Large Language Model Powered C-to-CUDA Code Translation: A Novel Auto-Parallelization Framework

GigaAPI: a user-space API that simplifies multi-GPU programming, bridging the gap between the capabilities of parallel GPU systems and the ability of developers to harness their full potential

Coccinelle: a C code transformation engine using SmPL for matches, refactorings, and bug fixing

DuoReduce: MLIR's benchmark

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