high performance computing on graphics processing units: hgpu.org

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A GPU operations framework for WattDB

Vitor Uwe Reus

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Tags: Computer science, CUDA, Databases, nVidia, nVidia GeForce GT 430, Thesis

September 17, 2012 by hgpu

Accelerating the Smith-Waterman Algorithm for Bio-sequence Matching on GPU

Qianghua Zhu, Fei Xia, Guoqing Jin

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Tags: Algorithms, Bioinformatics, Biology, CUDA, Databases, nVidia, nVidia GeForce GTX 470, Sequence alignment, Sequence matching, Smith-Waterman algorithm

September 16, 2012 by hgpu

High-Throughput parallel blind Virtual Screening using BINDSURF

Irene Sanchez-Linares, Horacio Perez-Sanchez, Jose M Cecilia, Jose M Garcia

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Tags: Bioinformatics, Biology, CUDA, Databases, nVidia, Tesla C2050

September 15, 2012 by hgpu

A First Step Towards GPU-assisted Query Optimization

Max Heimel, Volker Markl

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Source codes

Tags: Computer science, Databases, nVidia, nVidia GeForce GTX 460, OpenCL, Optimization, Package

September 11, 2012 by hgpu

A Parallel Twig Join Algorithm for XML Processing using a GPGPU

Lila Shnaiderman, Oded Shmueli

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Tags: Algorithms, Benchmarking, Computer science, CUDA, Databases, nVidia, nVidia GeForce GTX 480

September 10, 2012 by hgpu

A GPGPU Implementation of Approximate String Matching with Regular Expression Operators and Comparison with Its FPGA Implementation

Yuichiro Utan, Masato Inagi, Shin'ichi Wakabayashi, Shinobu Nagayama

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Tags: Algorithms, Computer science, CUDA, Databases, FPGA, nVidia, String matching, Tesla C2070

September 5, 2012 by hgpu

Approximate Similarity Search for Online Multimedia Services on Distributed CPU-GPU Platforms

George Teodoro, Eduardo Valle, Nathan Mariano, Ricardo Torres, Wagner Meira Jr, Joel H. Saltz

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Tags: Algorithms, Computer science, CUDA, Databases, Nearest neighbour, nVidia, nVidia GeForce GTX 260, nVidia GeForce GTX 470

September 4, 2012 by hgpu

Massive parallelization of serial inference algorithms for a complex generalized linear model

Marc A. Suchard, Shawn E. Simpson, Ivan Zorych, Patrick Ryan, David Madigan

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Tags: Algorithms, CUDA, Databases, Mathematics, nVidia, Statistics, Tesla C2050

August 9, 2012 by hgpu

Optimizing Data Warehousing Applications for GPUs Using Kernel Fusion/Fission

Haicheng Wu, Gregory Diamos, Ashwin Lele, Jin Wang, Srihari Cadambi, Sudhakar Yalamanchili, Srimat Chakradhar

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Tags: Compilers, Computer science, CUDA, Databases, nVidia, Optimization, Tesla C2070

August 9, 2012 by hgpu

Accelerating Pathology Image Data Cross-Comparison on CPU-GPU Hybrid Systems

Kaibo Wang, Yin Huai, Rubao Lee, Fusheng Wang, Xiaodong Zhang, Joel H. Saltz

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Tags: CUDA, Databases, Image processing, nVidia, nVidia GeForce GTX 580, Tesla M2050

August 2, 2012 by hgpu

GPU merge path: a GPU merging algorithm

Oded Green, Robert McColl, David A. Bader

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Tags: Algorithms, Computer science, CUDA, Databases, nVidia, Tesla C1060, Tesla C2070

August 1, 2012 by hgpu

High-Performance Online Spatial and Temporal Aggregations on Multi-core CPUs and Many-Core GPUs

Jianting Zhang, Simin You, Le Gruenwald

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Tags: Computer science, CUDA, Databases, nVidia, nVidia Quadro FX 6000

July 29, 2012 by hgpu

Reproducible Study and Performance Analysis of GPU Programming Paradigms: OpenACC vs. CUDA in Key Linear Algebra Computations

SW#SYCL

Analyzing the Performance Portability of SYCL across CPUs, GPUs, and Hybrid Systems with Protein Database Search

tdg-benchs: benchmarks used to test the performance of taskgraph

Leveraging the potential of task-based programming with OpenMP task graphs

LLOR: Automatic Repair of OpenMP Programs

LLOR: Automated Repair of OpenMP Programs

Solomon: Simple Off-LOading Macros Orchestrating multiple Notations

Unified schemes for directive-based GPU offloading

CLUEstering: a high-performance density-based clustering library for scientific computing

PyOMP: OpenMP for Python in Numba

PyOMP: Parallel programming for CPUs and GPUs with OpenMP and Python

See all packages

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high performance computing on graphics processing units: hgpu.org

A GPU operations framework for WattDB

Accelerating the Smith-Waterman Algorithm for Bio-sequence Matching on GPU

High-Throughput parallel blind Virtual Screening using BINDSURF

A First Step Towards GPU-assisted Query Optimization

A Parallel Twig Join Algorithm for XML Processing using a GPGPU

A GPGPU Implementation of Approximate String Matching with Regular Expression Operators and Comparison with Its FPGA Implementation

Approximate Similarity Search for Online Multimedia Services on Distributed CPU-GPU Platforms

Massive parallelization of serial inference algorithms for a complex generalized linear model

Optimizing Data Warehousing Applications for GPUs Using Kernel Fusion/Fission

Accelerating Pathology Image Data Cross-Comparison on CPU-GPU Hybrid Systems

GPU merge path: a GPU merging algorithm

High-Performance Online Spatial and Temporal Aggregations on Multi-core CPUs and Many-Core GPUs

Recent source codes

Matrix multiplication using Tensor Cores in CUDA

CPP Joules: Energy Measurement tool for CPP/CUDA programs

HPC-Coder-v2

Reproducible Study and Performance Analysis of GPU Programming Paradigms: OpenACC vs. CUDA in Key Linear Algebra Computations

SW#SYCL

tdg-benchs: benchmarks used to test the performance of taskgraph

LLOR: Automatic Repair of OpenMP Programs

Solomon: Simple Off-LOading Macros Orchestrating multiple Notations

CLUEstering: a high-performance density-based clustering library for scientific computing

PyOMP: OpenMP for Python in Numba

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