high performance computing on graphics processing units: hgpu.org

hgpu.org » Spectrometry

Accelerating the scoring module of mass spectrometry-based peptide identification using GPUs

You Li, Hao Chi, Leihao Xia, Xiaowen Chu

View

Download (PDF)

Tags: Bioinformatics, Biology, CUDA, GPU cluster, nVidia, nVidia GeForce GTX 580, Spectrometry

May 12, 2014 by hgpu

Speeding up Scoring Module of Mass Spectrometry Based Protein Identification by GPU

You Li, Xiaowen Chu

View

Download (PDF)

Tags: Bioinformatics, Biology, CUDA, Databases, nVidia, nVidia GeForce GTX 280, Spectrometry

September 25, 2012 by hgpu

Computational Biology and Applied Bioinformatics

Heitor Silverio Lopes, Leonardo Magalhaes Cruz

View

Download (PDF)

Tags: Bioinformatics, Biology, Book, Computational biology, CUDA, nVidia, Review, Sequence alignment, Spectrometry

October 23, 2011 by hgpu

Parallelizing Peptide-Spectrum scoring using modern graphics processing units

Jian Zhang, I. McQuillan, FangXiang Wu

Tags: Biology, CUDA, Macromolecule, nVidia, Spectrometry

June 14, 2011 by hgpu

Fast Parallel Tandem Mass Spectral Library Searching Using GPU Hardware Acceleration

Lydia A. Baumgardner, Avinash K. Shanmugam, Henry Lam, Jimmy K. Eng, Daniel B. Martin

Tags: Biology, Chemistry, CUDA, nVidia, Search, Spectrometry

May 10, 2011 by hgpu

Hardware-accelerated 3D visualization of mass spectrometry data

J. de Corral, H. Pfister

Tags: Physics, Rendering, Spectrometry, Visualization

December 1, 2010 by hgpu

Shamrock: Multi-GPU hydrodynamics for astrophysics

The Shamrock code: I- Smoothed Particle Hydrodynamics on GPUs

LLMPerf: GPU Performance Modeling meets Large Language Models

Hercules: A Compiler for Productive Programming of Heterogeneous Systems

TransCL: An Automatic CUDA-to-OpenCL Programs Transformation Framework

pyATF: The Auto-Tuning Framework (ATF) in Python

pyATF: Constraint-Based Auto-Tuning in Python

TritonBench: Benchmarking Large Language Model Capabilities for Generating Triton Operators

See all packages

* * *

high performance computing on graphics processing units: hgpu.org

Accelerating the scoring module of mass spectrometry-based peptide identification using GPUs

Speeding up Scoring Module of Mass Spectrometry Based Protein Identification by GPU

Computational Biology and Applied Bioinformatics

Parallelizing Peptide-Spectrum scoring using modern graphics processing units

Fast Parallel Tandem Mass Spectral Library Searching Using GPU Hardware Acceleration

Hardware-accelerated 3D visualization of mass spectrometry data

Recent source codes

Shamrock: Multi-GPU hydrodynamics for astrophysics

LLMPerf: GPU Performance Modeling meets Large Language Models

Hercules: A Compiler for Productive Programming of Heterogeneous Systems

Celerity Runtime: High-level C++ for Accelerator Clusters

wgpy: WebGL accelerated numpy-compatible array library for web browser

Microbenchmarking OpenMP target offload with Catch2

SUperman: Highly Efficient Permanent Computation Library

TransCL: An Automatic CUDA-to-OpenCL Programs Transformation Framework

pyATF: The Auto-Tuning Framework (ATF) in Python

TritonBench: Benchmarking Large Language Model Capabilities for Generating Triton Operators

Most viewed papers (last 30 days)