high performance computing on graphics processing units: hgpu.org

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Parallelizing Peptide-Spectrum scoring using modern graphics processing units

Jian Zhang, I. McQuillan, FangXiang Wu

Tags: Biology, CUDA, Macromolecule, nVidia, Spectrometry

June 14, 2011 by hgpu

Parallelism of Clonal Selection for PSP on CUDA

Hongbing Zhu, Heng Xiao, JinGuang Gu

Tags: Biology, CUDA, Macromolecule, nVidia

June 9, 2011 by hgpu

RNA secondary structure prediction using dynamic programming algorithm – A review and proposed work

M.N. Osman, R. Abdullah, N. AbdulRashid

Tags: Biology, Macromolecule, Molecular simulation, Pharmaceuticals

June 2, 2011 by hgpu

Accelerating All-Atom Normal Mode Analysis with Graphics Processing Unit

Li Liu, Xiaofeng Liu, Jiayu Gong, Hualiang Jiang, Honglin Li

Tags: Biology, Chemistry, CUDA, Macromolecule, Molecular dynamics, nVidia, Pharmaceuticals

June 2, 2011 by hgpu

Molecular Dynamics Simulation of Macromolecules Using Graphics Processing Unit

Ji Xu, Ying Ren, Wei Ge, Xiang Yu, Xiaozhen Yang, Jinghai Li

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Tags: CUDA, Macromolecule, Materials Science, Molecular dynamics, nVidia, nVidia GeForce GT 200, Soft Condensed Matter

November 3, 2010 by hgpu

Coccinelle: a C code transformation engine using SmPL for matches, refactorings, and bug fixing

Advances in Semantic Patching for HPC-oriented Refactorings with Coccinelle

DuoReduce: MLIR's benchmark

Hardware-Assisted Software Testing and Debugging for Heterogeneous Computing

Shamrock: Multi-GPU hydrodynamics for astrophysics

The Shamrock code: I- Smoothed Particle Hydrodynamics on GPUs

LLMPerf: GPU Performance Modeling meets Large Language Models

Hercules: A Compiler for Productive Programming of Heterogeneous Systems

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high performance computing on graphics processing units: hgpu.org

Parallelizing Peptide-Spectrum scoring using modern graphics processing units

Parallelism of Clonal Selection for PSP on CUDA

RNA secondary structure prediction using dynamic programming algorithm – A review and proposed work

Accelerating All-Atom Normal Mode Analysis with Graphics Processing Unit

Molecular Dynamics Simulation of Macromolecules Using Graphics Processing Unit

Recent source codes

Coccinelle: a C code transformation engine using SmPL for matches, refactorings, and bug fixing

DuoReduce: MLIR's benchmark

Shamrock: Multi-GPU hydrodynamics for astrophysics

LLMPerf: GPU Performance Modeling meets Large Language Models

Hercules: A Compiler for Productive Programming of Heterogeneous Systems

Celerity Runtime: High-level C++ for Accelerator Clusters

wgpy: WebGL accelerated numpy-compatible array library for web browser

Microbenchmarking OpenMP target offload with Catch2

SUperman: Highly Efficient Permanent Computation Library

TransCL: An Automatic CUDA-to-OpenCL Programs Transformation Framework

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